Hb_006829_040

Information

Type -
Description -
Location Contig6829: 29761-31875
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44750g
description hypothetical protein
nr
ID XP_006370672.1
description hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID U5GWJ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44750g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53886: 30192-30577 , PASA_asmbl_53887: 30612-30819 , PASA_asmbl_53888: 31205-31448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006829_040 0.0 - - hypothetical protein POPTR_0001s44750g [Populus trichocarpa]
2 Hb_001141_080 0.1049940101 - - PREDICTED: protein RDM1 [Jatropha curcas]
3 Hb_010866_040 0.1123237681 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
4 Hb_000373_270 0.1151744128 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
5 Hb_001623_550 0.1152185657 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
6 Hb_009404_010 0.1168120396 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
7 Hb_000370_030 0.1169966069 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
8 Hb_001840_080 0.1200545472 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
9 Hb_006452_030 0.1205881568 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000920_040 0.1228923137 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
11 Hb_003638_140 0.1242087952 - - protein binding protein, putative [Ricinus communis]
12 Hb_005147_110 0.1249879278 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
13 Hb_000120_800 0.1255643453 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
14 Hb_000300_280 0.1279601629 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
15 Hb_002270_010 0.128774746 - - Chaperone protein dnaJ, putative [Ricinus communis]
16 Hb_001047_020 0.1288457861 - - -
17 Hb_000184_130 0.1293051846 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_004310_060 0.131583605 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_002169_010 0.1333260035 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_012760_170 0.1343422118 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006829_040 Hb_006829_040 Hb_001141_080 Hb_001141_080 Hb_006829_040--Hb_001141_080 Hb_010866_040 Hb_010866_040 Hb_006829_040--Hb_010866_040 Hb_000373_270 Hb_000373_270 Hb_006829_040--Hb_000373_270 Hb_001623_550 Hb_001623_550 Hb_006829_040--Hb_001623_550 Hb_009404_010 Hb_009404_010 Hb_006829_040--Hb_009404_010 Hb_000370_030 Hb_000370_030 Hb_006829_040--Hb_000370_030 Hb_005147_110 Hb_005147_110 Hb_001141_080--Hb_005147_110 Hb_002249_140 Hb_002249_140 Hb_001141_080--Hb_002249_140 Hb_009382_020 Hb_009382_020 Hb_001141_080--Hb_009382_020 Hb_004310_060 Hb_004310_060 Hb_001141_080--Hb_004310_060 Hb_008725_250 Hb_008725_250 Hb_001141_080--Hb_008725_250 Hb_003428_110 Hb_003428_110 Hb_001141_080--Hb_003428_110 Hb_002169_010 Hb_002169_010 Hb_010866_040--Hb_002169_010 Hb_010866_040--Hb_004310_060 Hb_000462_150 Hb_000462_150 Hb_010866_040--Hb_000462_150 Hb_000457_060 Hb_000457_060 Hb_010866_040--Hb_000457_060 Hb_018663_020 Hb_018663_020 Hb_010866_040--Hb_018663_020 Hb_010866_040--Hb_000370_030 Hb_001341_030 Hb_001341_030 Hb_000373_270--Hb_001341_030 Hb_000373_270--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_000373_270--Hb_000300_280 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000879_140 Hb_000879_140 Hb_000373_270--Hb_000879_140 Hb_001009_050 Hb_001009_050 Hb_001623_550--Hb_001009_050 Hb_001623_550--Hb_018663_020 Hb_001623_550--Hb_002169_010 Hb_001623_550--Hb_000186_280 Hb_011496_010 Hb_011496_010 Hb_001623_550--Hb_011496_010 Hb_001969_040 Hb_001969_040 Hb_001623_550--Hb_001969_040 Hb_009404_010--Hb_001969_040 Hb_004324_280 Hb_004324_280 Hb_009404_010--Hb_004324_280 Hb_009404_010--Hb_000462_150 Hb_005144_040 Hb_005144_040 Hb_009404_010--Hb_005144_040 Hb_002818_040 Hb_002818_040 Hb_009404_010--Hb_002818_040 Hb_009404_010--Hb_005147_110 Hb_000184_130 Hb_000184_130 Hb_000370_030--Hb_000184_130 Hb_000370_030--Hb_000300_280 Hb_000370_030--Hb_000457_060 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9368 4.02662 0.710159 1.60822 5.60679 12.6152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.74063 3.67247 5.61115 2.90736 2.22608

CAGE analysis