Hb_006829_060

Information

Type -
Description -
Location Contig6829: 37228-44899
Sequence    

Annotation

kegg
ID rcu:RCOM_0586590
description hypothetical protein
nr
ID XP_012070779.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067KSG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00849 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53889: 37292-40499 , PASA_asmbl_53890: 37455-40499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006829_060 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
2 Hb_000012_080 0.073799195 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
3 Hb_000979_130 0.0799726385 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
4 Hb_001976_030 0.0877609761 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
5 Hb_000057_110 0.0888602096 - - PREDICTED: kinesin-13A [Jatropha curcas]
6 Hb_002687_160 0.0922688748 - - PREDICTED: uncharacterized protein LOC105643395 [Jatropha curcas]
7 Hb_019654_020 0.0930318422 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
8 Hb_000395_110 0.0932842874 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
9 Hb_000049_180 0.0948175052 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
10 Hb_000585_110 0.0955943569 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
11 Hb_008725_270 0.0963486536 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
12 Hb_003058_100 0.1015543199 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
13 Hb_000638_070 0.1035972575 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
14 Hb_000007_090 0.1048289192 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
15 Hb_000665_180 0.1054402549 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
16 Hb_000367_180 0.105873196 - - Heparanase-2, putative [Ricinus communis]
17 Hb_000260_510 0.1064369127 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
18 Hb_002627_040 0.1083234522 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
19 Hb_008025_010 0.1097795725 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
20 Hb_001188_100 0.1104214672 - - hypothetical protein JCGZ_05568 [Jatropha curcas]

Gene co-expression network

sample Hb_006829_060 Hb_006829_060 Hb_000012_080 Hb_000012_080 Hb_006829_060--Hb_000012_080 Hb_000979_130 Hb_000979_130 Hb_006829_060--Hb_000979_130 Hb_001976_030 Hb_001976_030 Hb_006829_060--Hb_001976_030 Hb_000057_110 Hb_000057_110 Hb_006829_060--Hb_000057_110 Hb_002687_160 Hb_002687_160 Hb_006829_060--Hb_002687_160 Hb_019654_020 Hb_019654_020 Hb_006829_060--Hb_019654_020 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_005694_060 Hb_005694_060 Hb_000979_130--Hb_005694_060 Hb_000260_510 Hb_000260_510 Hb_000979_130--Hb_000260_510 Hb_000367_180 Hb_000367_180 Hb_000979_130--Hb_000367_180 Hb_015884_020 Hb_015884_020 Hb_000979_130--Hb_015884_020 Hb_000979_130--Hb_019654_020 Hb_000979_130--Hb_000395_110 Hb_000049_180 Hb_000049_180 Hb_001976_030--Hb_000049_180 Hb_001628_120 Hb_001628_120 Hb_001976_030--Hb_001628_120 Hb_042083_040 Hb_042083_040 Hb_001976_030--Hb_042083_040 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000684_030 Hb_000684_030 Hb_000057_110--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_002627_040 Hb_002627_040 Hb_002687_160--Hb_002627_040 Hb_002687_160--Hb_000979_130 Hb_000025_540 Hb_000025_540 Hb_002687_160--Hb_000025_540 Hb_002687_160--Hb_008725_270 Hb_014497_010 Hb_014497_010 Hb_002687_160--Hb_014497_010 Hb_019654_020--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_019654_020--Hb_000007_060 Hb_019654_020--Hb_015884_020 Hb_000585_110 Hb_000585_110 Hb_019654_020--Hb_000585_110 Hb_003058_100 Hb_003058_100 Hb_019654_020--Hb_003058_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60705 1.48553 6.9676 7.68003 1.55873 1.33421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67483 1.57725 3.32996 3.2512 7.05966

CAGE analysis