Hb_006829_090

Information

Type -
Description -
Location Contig6829: 80789-82095
Sequence    

Annotation

kegg
ID rcu:RCOM_0586970
description Protein MOS2, putative
nr
ID XP_012070772.1
description PREDICTED: protein MOS2 [Jatropha curcas]
swissprot
ID Q9C801
description Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1
trembl
ID B9SAH9
description Protein MOS2, putative OS=Ricinus communis GN=RCOM_0586970 PE=4 SV=1
Gene Ontology
ID GO:0050896
description protein mos2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006829_090 0.0 - - PREDICTED: protein MOS2 [Jatropha curcas]
2 Hb_078477_040 0.0601475018 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_006002_030 0.0644668638 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
4 Hb_000120_510 0.0687081102 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
5 Hb_001396_290 0.0727217593 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
6 Hb_002133_030 0.0763195949 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
7 Hb_005462_020 0.0775631551 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
8 Hb_000504_160 0.0783980884 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
9 Hb_001278_060 0.0798864145 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_000239_070 0.0807614605 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
11 Hb_001301_210 0.0831505769 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Jatropha curcas]
12 Hb_000313_340 0.0835429979 - - DNA repair protein xp-E, putative [Ricinus communis]
13 Hb_000331_190 0.0836409999 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
14 Hb_002883_010 0.0854822127 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
15 Hb_000227_380 0.0883611904 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
16 Hb_002612_010 0.0897947274 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
17 Hb_073171_080 0.0898483272 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
18 Hb_004225_130 0.0905727067 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
19 Hb_000343_210 0.0910375413 - - ran-binding protein, putative [Ricinus communis]
20 Hb_003866_020 0.0920502762 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006829_090 Hb_006829_090 Hb_078477_040 Hb_078477_040 Hb_006829_090--Hb_078477_040 Hb_006002_030 Hb_006002_030 Hb_006829_090--Hb_006002_030 Hb_000120_510 Hb_000120_510 Hb_006829_090--Hb_000120_510 Hb_001396_290 Hb_001396_290 Hb_006829_090--Hb_001396_290 Hb_002133_030 Hb_002133_030 Hb_006829_090--Hb_002133_030 Hb_005462_020 Hb_005462_020 Hb_006829_090--Hb_005462_020 Hb_078477_040--Hb_006002_030 Hb_078477_040--Hb_005462_020 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_006002_030--Hb_001278_060 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_000120_510--Hb_001396_290 Hb_001301_210 Hb_001301_210 Hb_000120_510--Hb_001301_210 Hb_000331_190 Hb_000331_190 Hb_000120_510--Hb_000331_190 Hb_000343_210 Hb_000343_210 Hb_000120_510--Hb_000343_210 Hb_000244_240 Hb_000244_240 Hb_000120_510--Hb_000244_240 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_023020_060 Hb_023020_060 Hb_002133_030--Hb_023020_060 Hb_001498_030 Hb_001498_030 Hb_002133_030--Hb_001498_030 Hb_003125_060 Hb_003125_060 Hb_002133_030--Hb_003125_060 Hb_004724_360 Hb_004724_360 Hb_002133_030--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_002133_030--Hb_000327_310 Hb_002133_030--Hb_000343_210 Hb_004970_160 Hb_004970_160 Hb_005462_020--Hb_004970_160 Hb_005462_020--Hb_006002_030 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.8966 35.6608 14.301 10.4441 68.4734 64.7128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1096 14.4954 12.1157 19.8465 13.2191

CAGE analysis