Hb_006831_010

Information

Type -
Description -
Location Contig6831: 2049-6122
Sequence    

Annotation

kegg
ID rcu:RCOM_0820320
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID AIU41650.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZUT0
description ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1
trembl
ID A0A097P9R1
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG20 PE=2 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53906: 5295-5938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000345_040 0.1113793665 rubber biosynthesis Gene Name: REF4 -
3 Hb_001017_090 0.113121071 - - -
4 Hb_000442_030 0.1144295989 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004659_120 0.1153356583 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
6 Hb_008695_190 0.1153728717 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
7 Hb_005245_090 0.1159999747 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
8 Hb_000387_080 0.1199533808 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
9 Hb_010174_120 0.1201881884 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
10 Hb_000184_040 0.1203141184 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
11 Hb_005941_010 0.1203691322 - - PREDICTED: protein SAND [Jatropha curcas]
12 Hb_006787_040 0.1205898369 - - polyadenylate-binding protein, putative [Ricinus communis]
13 Hb_023226_090 0.1248362089 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
14 Hb_024505_040 0.1251683993 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
15 Hb_000849_040 0.125663082 - - transcription factor, putative [Ricinus communis]
16 Hb_001366_220 0.1257049096 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000762_020 0.125893414 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
18 Hb_005779_100 0.1263024542 - - DNAJ [Theobroma cacao]
19 Hb_000282_060 0.127882147 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
20 Hb_006602_020 0.1292273108 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_006831_010 Hb_006831_010 Hb_000345_040 Hb_000345_040 Hb_006831_010--Hb_000345_040 Hb_001017_090 Hb_001017_090 Hb_006831_010--Hb_001017_090 Hb_000442_030 Hb_000442_030 Hb_006831_010--Hb_000442_030 Hb_004659_120 Hb_004659_120 Hb_006831_010--Hb_004659_120 Hb_008695_190 Hb_008695_190 Hb_006831_010--Hb_008695_190 Hb_005245_090 Hb_005245_090 Hb_006831_010--Hb_005245_090 Hb_000345_030 Hb_000345_030 Hb_000345_040--Hb_000345_030 Hb_006132_060 Hb_006132_060 Hb_000345_040--Hb_006132_060 Hb_010174_120 Hb_010174_120 Hb_000345_040--Hb_010174_120 Hb_000345_040--Hb_004659_120 Hb_024505_040 Hb_024505_040 Hb_000345_040--Hb_024505_040 Hb_002506_010 Hb_002506_010 Hb_001017_090--Hb_002506_010 Hb_001476_100 Hb_001476_100 Hb_001017_090--Hb_001476_100 Hb_009510_030 Hb_009510_030 Hb_001017_090--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_001017_090--Hb_010931_100 Hb_000264_190 Hb_000264_190 Hb_001017_090--Hb_000264_190 Hb_000258_430 Hb_000258_430 Hb_001017_090--Hb_000258_430 Hb_000849_040 Hb_000849_040 Hb_000442_030--Hb_000849_040 Hb_006787_040 Hb_006787_040 Hb_000442_030--Hb_006787_040 Hb_000442_030--Hb_024505_040 Hb_000387_080 Hb_000387_080 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_000442_030--Hb_001017_090 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_000184_040 Hb_000184_040 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_004659_120--Hb_010174_120 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_001981_090 Hb_001981_090 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020 Hb_000771_140 Hb_000771_140 Hb_005245_090--Hb_000771_140 Hb_005941_010 Hb_005941_010 Hb_005245_090--Hb_005941_010 Hb_004242_100 Hb_004242_100 Hb_005245_090--Hb_004242_100 Hb_098709_010 Hb_098709_010 Hb_005245_090--Hb_098709_010 Hb_026048_090 Hb_026048_090 Hb_005245_090--Hb_026048_090 Hb_005245_090--Hb_009510_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1958 5.75694 0.766155 6.3057 26.1458 38.0954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.7943 22.3876 41.8581 6.73874 0.548415

CAGE analysis