Hb_006831_030

Information

Type -
Description -
Location Contig6831: 10941-13509
Sequence    

Annotation

kegg
ID pmum:103324385
description ras-related protein RABB1c
nr
ID XP_004293420.1
description PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
swissprot
ID P92963
description Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1
trembl
ID A0A023HJ68
description Rab8 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005773
description ras-related protein rabb1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53907: 11012-13474 , PASA_asmbl_53908: 11525-11811
cDNA
(Sanger)
(ID:Location)		 032_C23.ab1: 11166-13277 , 039_F01.ab1: 11155-13331 , 041_P20.ab1: 11014-13124 , 043_K22.ab1: 11014-13185 , 048_J07.ab1: 11155-13361

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_030 0.0 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
2 Hb_000069_100 0.0645328452 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000398_160 0.0711623341 - - GDP-mannose transporter, putative [Ricinus communis]
4 Hb_011245_020 0.0724855989 - - Ferrochelatase [Medicago truncatula]
5 Hb_001935_030 0.0781560775 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001268_080 0.0803017899 - - catalytic, putative [Ricinus communis]
7 Hb_001006_180 0.0861335735 - - PREDICTED: endonuclease V-like [Jatropha curcas]
8 Hb_017862_010 0.0882102489 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
9 Hb_003929_120 0.0894222305 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
10 Hb_000567_170 0.0904564818 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
11 Hb_024714_060 0.0917578396 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
12 Hb_000272_070 0.0956360397 - - snare protein YKt [Hevea brasiliensis]
13 Hb_007382_150 0.0973717497 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
14 Hb_000212_260 0.0981901061 - - acyl-carrier-protein [Triadica sebifera]
15 Hb_001762_060 0.098949559 - - pantothenate kinase, putative [Ricinus communis]
16 Hb_002603_150 0.1027332394 - - PREDICTED: protein yippee-like [Jatropha curcas]
17 Hb_000367_280 0.105141898 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
18 Hb_000329_330 0.1051825263 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
19 Hb_004041_040 0.105597835 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
20 Hb_001616_060 0.1062626785 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_006831_030 Hb_006831_030 Hb_000069_100 Hb_000069_100 Hb_006831_030--Hb_000069_100 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000398_160--Hb_000069_100 Hb_000398_160--Hb_001006_180 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_000367_280 Hb_000367_280 Hb_011245_020--Hb_000367_280 Hb_011245_020--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_011245_020--Hb_007810_030 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010 Hb_001473_120 Hb_001473_120 Hb_001935_030--Hb_001473_120 Hb_001329_210 Hb_001329_210 Hb_001935_030--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_001935_030--Hb_000069_100 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040 Hb_001762_060 Hb_001762_060 Hb_001006_180--Hb_001762_060 Hb_024714_060 Hb_024714_060 Hb_001006_180--Hb_024714_060 Hb_012423_050 Hb_012423_050 Hb_001006_180--Hb_012423_050 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.6789 13.5958 19.7263 52.7737 65.8164 96.5189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
281.516 330.435 282.891 37.633 22.469

CAGE analysis