Hb_006831_100

Information

Type -
Description -
Location Contig6831: 52580-53606
Sequence    

Annotation

kegg
ID rcu:RCOM_0820550
description snRNA-activating protein complex subunit, putative
nr
ID XP_002525235.1
description snRNA-activating protein complex subunit, putative [Ricinus communis]
swissprot
ID Q8L627
description snRNA-activating protein complex subunit OS=Arabidopsis thaliana GN=SRD2 PE=1 SV=1
trembl
ID B9SGW6
description snRNA-activating protein complex subunit, putative OS=Ricinus communis GN=RCOM_0820550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_100 0.0 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
2 Hb_001807_030 0.18213869 - - PREDICTED: CDT1-like protein b [Jatropha curcas]
3 Hb_005803_010 0.1823413803 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_007645_120 0.185832894 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
5 Hb_007765_060 0.1877582121 - - Proliferating cell nuclear antigen [Theobroma cacao]
6 Hb_001001_020 0.1887035792 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
7 Hb_001160_120 0.1897315637 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000297_110 0.1985640613 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
9 Hb_018790_070 0.201079464 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
10 Hb_002947_040 0.2027990488 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
11 Hb_000453_190 0.203114688 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
12 Hb_001807_010 0.2050111883 - - hypothetical protein MTR_6g077630 [Medicago truncatula]
13 Hb_005846_020 0.2094101687 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
14 Hb_002783_120 0.2099168676 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
15 Hb_004342_020 0.2101698839 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
16 Hb_000521_140 0.2113304697 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
17 Hb_002249_160 0.2136193635 - - -
18 Hb_000976_080 0.2152758262 - - hypothetical protein VITISV_034376 [Vitis vinifera]
19 Hb_001040_040 0.2177560688 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
20 Hb_002026_140 0.2192236183 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]

Gene co-expression network

sample Hb_006831_100 Hb_006831_100 Hb_001807_030 Hb_001807_030 Hb_006831_100--Hb_001807_030 Hb_005803_010 Hb_005803_010 Hb_006831_100--Hb_005803_010 Hb_007645_120 Hb_007645_120 Hb_006831_100--Hb_007645_120 Hb_007765_060 Hb_007765_060 Hb_006831_100--Hb_007765_060 Hb_001001_020 Hb_001001_020 Hb_006831_100--Hb_001001_020 Hb_001160_120 Hb_001160_120 Hb_006831_100--Hb_001160_120 Hb_009265_050 Hb_009265_050 Hb_001807_030--Hb_009265_050 Hb_001269_200 Hb_001269_200 Hb_001807_030--Hb_001269_200 Hb_001807_010 Hb_001807_010 Hb_001807_030--Hb_001807_010 Hb_000173_150 Hb_000173_150 Hb_001807_030--Hb_000173_150 Hb_006915_020 Hb_006915_020 Hb_001807_030--Hb_006915_020 Hb_000165_140 Hb_000165_140 Hb_001807_030--Hb_000165_140 Hb_005846_020 Hb_005846_020 Hb_005803_010--Hb_005846_020 Hb_000345_530 Hb_000345_530 Hb_005803_010--Hb_000345_530 Hb_018790_070 Hb_018790_070 Hb_005803_010--Hb_018790_070 Hb_000976_080 Hb_000976_080 Hb_005803_010--Hb_000976_080 Hb_152453_010 Hb_152453_010 Hb_005803_010--Hb_152453_010 Hb_002249_160 Hb_002249_160 Hb_005803_010--Hb_002249_160 Hb_003125_140 Hb_003125_140 Hb_007645_120--Hb_003125_140 Hb_156144_030 Hb_156144_030 Hb_007645_120--Hb_156144_030 Hb_000120_570 Hb_000120_570 Hb_007645_120--Hb_000120_570 Hb_102129_070 Hb_102129_070 Hb_007645_120--Hb_102129_070 Hb_000453_140 Hb_000453_140 Hb_007645_120--Hb_000453_140 Hb_000740_070 Hb_000740_070 Hb_007765_060--Hb_000740_070 Hb_005725_070 Hb_005725_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_001956_050 Hb_001956_050 Hb_007765_060--Hb_001956_050 Hb_000544_040 Hb_000544_040 Hb_007765_060--Hb_000544_040 Hb_004117_030 Hb_004117_030 Hb_007765_060--Hb_004117_030 Hb_005695_060 Hb_005695_060 Hb_001001_020--Hb_005695_060 Hb_001001_020--Hb_000976_080 Hb_001001_020--Hb_001160_120 Hb_002783_120 Hb_002783_120 Hb_001001_020--Hb_002783_120 Hb_000453_190 Hb_000453_190 Hb_001001_020--Hb_000453_190 Hb_001001_020--Hb_018790_070 Hb_001050_010 Hb_001050_010 Hb_001160_120--Hb_001050_010 Hb_001040_040 Hb_001040_040 Hb_001160_120--Hb_001040_040 Hb_011915_010 Hb_011915_010 Hb_001160_120--Hb_011915_010 Hb_011609_170 Hb_011609_170 Hb_001160_120--Hb_011609_170 Hb_001160_120--Hb_002783_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.790118 0.244968 0.774484 0.164211 0.816756 0.3575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.093123 0.146389 0.387042 0.23939 0

CAGE analysis