Hb_006831_110

Information

Type -
Description -
Location Contig6831: 70290-78820
Sequence    

Annotation

kegg
ID rcu:RCOM_0820810
description WD-repeat protein, putative
nr
ID XP_012082200.1
description PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
swissprot
ID Q9Y7K5
description Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=3 SV=2
trembl
ID B9SGX2
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0820810 PE=4 SV=1
Gene Ontology
ID GO:0016757
description uncharacterized wd repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53923: 70350-78756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_110 0.0 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
2 Hb_000071_030 0.0509539364 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
3 Hb_002042_140 0.0521948863 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
4 Hb_005321_020 0.0522175519 - - splicing factor-related family protein [Populus trichocarpa]
5 Hb_000283_070 0.058385057 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
6 Hb_009620_050 0.0602808022 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
7 Hb_000107_500 0.06053485 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
8 Hb_002255_050 0.0631113602 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000574_440 0.0643504637 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
10 Hb_000084_250 0.0654725953 - - nucleolar phosphoprotein, putative [Ricinus communis]
11 Hb_005993_050 0.0657016107 - - Protein AFR, putative [Ricinus communis]
12 Hb_000563_640 0.0670376367 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
13 Hb_000680_090 0.0682297385 - - Protein SEY1, putative [Ricinus communis]
14 Hb_000777_050 0.0692614657 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
15 Hb_000645_120 0.0700825809 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
16 Hb_003531_060 0.0706109407 - - unnamed protein product [Coffea canephora]
17 Hb_027380_140 0.071412457 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_000922_370 0.0729414049 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
19 Hb_002615_090 0.0741576487 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_002221_050 0.0742406938 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006831_110 Hb_006831_110 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_006831_110--Hb_005321_020 Hb_000283_070 Hb_000283_070 Hb_006831_110--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_000107_500 Hb_000107_500 Hb_006831_110--Hb_000107_500 Hb_000680_090 Hb_000680_090 Hb_000071_030--Hb_000680_090 Hb_000071_030--Hb_002042_140 Hb_000071_030--Hb_005321_020 Hb_000983_150 Hb_000983_150 Hb_000071_030--Hb_000983_150 Hb_000366_120 Hb_000366_120 Hb_000071_030--Hb_000366_120 Hb_000002_040 Hb_000002_040 Hb_002042_140--Hb_000002_040 Hb_004128_050 Hb_004128_050 Hb_002042_140--Hb_004128_050 Hb_010695_020 Hb_010695_020 Hb_002042_140--Hb_010695_020 Hb_000743_040 Hb_000743_040 Hb_002042_140--Hb_000743_040 Hb_007558_120 Hb_007558_120 Hb_002042_140--Hb_007558_120 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_000645_120 Hb_000645_120 Hb_005321_020--Hb_000645_120 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_005321_020--Hb_000283_070 Hb_005321_020--Hb_009620_050 Hb_000283_070--Hb_000107_500 Hb_000283_070--Hb_000645_120 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_009620_050--Hb_000563_640 Hb_009620_050--Hb_000107_500 Hb_002174_020 Hb_002174_020 Hb_009620_050--Hb_002174_020 Hb_009620_050--Hb_002042_140 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.949 83.9288 49.0047 55.0869 98.3924 105.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.4494 35.6009 73.0957 57.3494 49.6295

CAGE analysis