Hb_006831_120

Information

Type -
Description -
Location Contig6831: 82347-86734
Sequence    

Annotation

kegg
ID rcu:RCOM_0820590
description catalytic, putative
nr
ID XP_012082205.1
description PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
swissprot
ID P54567
description Uncharacterized protein YqkD OS=Bacillus subtilis (strain 168) GN=yqkD PE=4 SV=1
trembl
ID A0A067K1T1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16412 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53927: 82339-83695 , PASA_asmbl_53928: 84030-109607 , PASA_asmbl_53930: 84030-109102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_120 0.0 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
2 Hb_001776_160 0.0576894095 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
3 Hb_000103_320 0.0645307667 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_000638_250 0.0675412696 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000340_570 0.069066668 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
6 Hb_028872_080 0.0701765703 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
7 Hb_000140_050 0.0707555827 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
8 Hb_001396_100 0.077776911 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001279_340 0.078743999 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
10 Hb_000086_280 0.0808229871 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
11 Hb_000261_140 0.0816183071 - - -
12 Hb_026889_030 0.08505571 - - protein with unknown function [Ricinus communis]
13 Hb_000240_090 0.0861513982 - - Rab5 [Hevea brasiliensis]
14 Hb_027654_050 0.0863946961 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
15 Hb_003540_030 0.0865061705 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
16 Hb_068056_030 0.0869036982 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
17 Hb_010883_050 0.08770744 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
18 Hb_001904_090 0.0888559494 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
19 Hb_002110_200 0.0892145996 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_003581_150 0.0896640544 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]

Gene co-expression network

sample Hb_006831_120 Hb_006831_120 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_027654_050 Hb_027654_050 Hb_001776_160--Hb_027654_050 Hb_001085_120 Hb_001085_120 Hb_001776_160--Hb_001085_120 Hb_002110_200 Hb_002110_200 Hb_001776_160--Hb_002110_200 Hb_001512_080 Hb_001512_080 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_000103_320--Hb_000638_250 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_000638_250--Hb_152784_010 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_001545_160 Hb_001545_160 Hb_000340_570--Hb_001545_160 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000340_570--Hb_000261_140 Hb_000205_090 Hb_000205_090 Hb_000340_570--Hb_000205_090 Hb_026889_030 Hb_026889_030 Hb_028872_080--Hb_026889_030 Hb_017225_020 Hb_017225_020 Hb_028872_080--Hb_017225_020 Hb_010361_010 Hb_010361_010 Hb_028872_080--Hb_010361_010 Hb_118419_010 Hb_118419_010 Hb_028872_080--Hb_118419_010 Hb_001604_060 Hb_001604_060 Hb_028872_080--Hb_001604_060 Hb_003540_030 Hb_003540_030 Hb_000140_050--Hb_003540_030 Hb_001545_100 Hb_001545_100 Hb_000140_050--Hb_001545_100 Hb_000140_050--Hb_001776_160 Hb_000140_050--Hb_028872_080 Hb_007904_260 Hb_007904_260 Hb_000140_050--Hb_007904_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.9008 4.2559 9.3972 9.92965 5.57072 7.08558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.255 20.9656 20.3413 5.88934 7.03647

CAGE analysis