Hb_006831_130

Information

Type -
Description -
Location Contig6831: 107889-109942
Sequence    

Annotation

kegg
ID rcu:RCOM_0820590
description catalytic, putative
nr
ID XP_002525239.1
description catalytic, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGX0
description Catalytic, putative OS=Ricinus communis GN=RCOM_0820590 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53928: 84030-109607 , PASA_asmbl_53930: 84030-109102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_130 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002768_030 0.0775444576 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
3 Hb_000035_370 0.0777035287 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010175_040 0.0843157106 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
5 Hb_004453_170 0.086850084 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
6 Hb_000996_140 0.0868891867 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
7 Hb_026053_020 0.0880489987 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
8 Hb_001141_140 0.0910054287 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_003018_010 0.0913276589 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
10 Hb_006925_040 0.0938946451 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
11 Hb_131181_010 0.0943872469 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
12 Hb_003683_110 0.0953265157 - - JHL10I11.3 [Jatropha curcas]
13 Hb_134949_020 0.0990052277 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
14 Hb_001476_080 0.0994731845 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
15 Hb_077354_010 0.1005454886 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
16 Hb_000115_220 0.100922731 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
17 Hb_003053_010 0.1016046528 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
18 Hb_000261_140 0.1016620972 - - -
19 Hb_004157_020 0.1018654147 - - PREDICTED: histone H2B-like [Gossypium raimondii]
20 Hb_003185_110 0.101877355 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_006831_130 Hb_006831_130 Hb_002768_030 Hb_002768_030 Hb_006831_130--Hb_002768_030 Hb_000035_370 Hb_000035_370 Hb_006831_130--Hb_000035_370 Hb_010175_040 Hb_010175_040 Hb_006831_130--Hb_010175_040 Hb_004453_170 Hb_004453_170 Hb_006831_130--Hb_004453_170 Hb_000996_140 Hb_000996_140 Hb_006831_130--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_006831_130--Hb_026053_020 Hb_003683_110 Hb_003683_110 Hb_002768_030--Hb_003683_110 Hb_001780_040 Hb_001780_040 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_002768_030--Hb_000996_140 Hb_002768_030--Hb_000035_370 Hb_001476_080 Hb_001476_080 Hb_000035_370--Hb_001476_080 Hb_000920_110 Hb_000920_110 Hb_000035_370--Hb_000920_110 Hb_000001_060 Hb_000001_060 Hb_000035_370--Hb_000001_060 Hb_000035_370--Hb_026053_020 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_001832_060 Hb_001832_060 Hb_004453_170--Hb_001832_060 Hb_001195_480 Hb_001195_480 Hb_004453_170--Hb_001195_480 Hb_000462_130 Hb_000462_130 Hb_004453_170--Hb_000462_130 Hb_000260_550 Hb_000260_550 Hb_004453_170--Hb_000260_550 Hb_001123_130 Hb_001123_130 Hb_004453_170--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_004453_170--Hb_000527_060 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_000996_140--Hb_026053_020 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_008071_020 Hb_008071_020 Hb_026053_020--Hb_008071_020 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_026053_020--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7357 11.1645 27.9114 15.0193 10.5683 15.5665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1736 53.5828 23.5912 8.86448 9.51261

CAGE analysis