Hb_006831_140

Information

Type transcription factor
Description TF Family: G2-like
Location Contig6831: 110227-116487
Sequence    

Annotation

kegg
ID rcu:RCOM_0820580
description transcription factor, putative
nr
ID XP_002525238.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SGW9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0820580 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53932: 110324-112624 , PASA_asmbl_53933: 111401-111598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006831_140 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_000708_030 0.0453539126 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
3 Hb_000078_120 0.0468006679 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
4 Hb_093458_040 0.0501462956 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
5 Hb_001876_050 0.0554415619 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
6 Hb_001021_150 0.0556285271 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
7 Hb_002078_350 0.0585567569 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
8 Hb_004324_130 0.0598634615 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_008847_030 0.0614063133 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
10 Hb_001599_040 0.0614163341 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
11 Hb_002110_190 0.0614210521 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
12 Hb_000976_140 0.0629979117 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
13 Hb_000035_470 0.063239652 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_000138_100 0.0633690248 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
15 Hb_001301_150 0.06408258 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
16 Hb_000556_120 0.0646029603 - - Spastin, putative [Ricinus communis]
17 Hb_001946_400 0.065029726 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
18 Hb_001359_050 0.0651337098 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008725_230 0.0651351977 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_033642_090 0.06608986 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006831_140 Hb_006831_140 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_000708_030--Hb_093458_040 Hb_002994_030 Hb_002994_030 Hb_000078_120--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_000078_120--Hb_000696_330 Hb_000078_120--Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_000078_120--Hb_011386_010 Hb_000078_120--Hb_000708_030 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_001876_050--Hb_001999_310 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.61209 10.4838 10.6554 12.4041 9.9442 12.1525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8621 13.9428 9.69516 14.1789 11.2315

CAGE analysis