Hb_006834_010

Information

Type -
Description -
Location Contig6834: 30732-31848
Sequence    

Annotation

kegg
ID rcu:RCOM_0442430
description hypothetical protein
nr
ID XP_002532778.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3F9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0442430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006834_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000853_010 0.0766687563 - - Pectinesterase-3 precursor, putative [Ricinus communis]
3 Hb_001416_170 0.078479781 - - kinase, putative [Ricinus communis]
4 Hb_004984_020 0.08796205 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
5 Hb_002580_020 0.1117506328 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
6 Hb_055440_010 0.1223517708 - - protein binding protein, putative [Ricinus communis]
7 Hb_001002_090 0.1357021866 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
8 Hb_000975_130 0.1363147861 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
9 Hb_002437_010 0.1399222745 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
10 Hb_014865_010 0.141533815 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]
11 Hb_000979_080 0.1423150107 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
12 Hb_000676_130 0.1423328197 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
13 Hb_055147_020 0.1451740372 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
14 Hb_000187_110 0.1472556254 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
15 Hb_003811_050 0.1509136327 - - hypothetical protein JCGZ_01310 [Jatropha curcas]
16 Hb_000993_020 0.1526661678 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
17 Hb_003768_110 0.1565715936 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
18 Hb_000479_230 0.1567537195 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
19 Hb_000161_230 0.1585469977 - - lactoylglutathione lyase, putative [Ricinus communis]
20 Hb_005144_080 0.1605885664 - - Serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006834_010 Hb_006834_010 Hb_000853_010 Hb_000853_010 Hb_006834_010--Hb_000853_010 Hb_001416_170 Hb_001416_170 Hb_006834_010--Hb_001416_170 Hb_004984_020 Hb_004984_020 Hb_006834_010--Hb_004984_020 Hb_002580_020 Hb_002580_020 Hb_006834_010--Hb_002580_020 Hb_055440_010 Hb_055440_010 Hb_006834_010--Hb_055440_010 Hb_001002_090 Hb_001002_090 Hb_006834_010--Hb_001002_090 Hb_000853_010--Hb_001416_170 Hb_003811_050 Hb_003811_050 Hb_000853_010--Hb_003811_050 Hb_000975_130 Hb_000975_130 Hb_000853_010--Hb_000975_130 Hb_000853_010--Hb_002580_020 Hb_000853_010--Hb_004984_020 Hb_055147_020 Hb_055147_020 Hb_001416_170--Hb_055147_020 Hb_001416_170--Hb_000975_130 Hb_001416_170--Hb_004984_020 Hb_001416_170--Hb_055440_010 Hb_004984_020--Hb_055440_010 Hb_004984_020--Hb_002580_020 Hb_005144_080 Hb_005144_080 Hb_004984_020--Hb_005144_080 Hb_009615_030 Hb_009615_030 Hb_002580_020--Hb_009615_030 Hb_081191_010 Hb_081191_010 Hb_002580_020--Hb_081191_010 Hb_002580_020--Hb_003811_050 Hb_000676_130 Hb_000676_130 Hb_002580_020--Hb_000676_130 Hb_055440_010--Hb_001002_090 Hb_072997_010 Hb_072997_010 Hb_055440_010--Hb_072997_010 Hb_004096_010 Hb_004096_010 Hb_055440_010--Hb_004096_010 Hb_000979_080 Hb_000979_080 Hb_055440_010--Hb_000979_080 Hb_001002_090--Hb_000979_080 Hb_000187_110 Hb_000187_110 Hb_001002_090--Hb_000187_110 Hb_001002_090--Hb_072997_010 Hb_009767_030 Hb_009767_030 Hb_001002_090--Hb_009767_030 Hb_001776_070 Hb_001776_070 Hb_001002_090--Hb_001776_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0277701 0.827421 2.70965 5.36584 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.44068 0.0818248

CAGE analysis