Hb_006839_010

Information

Type -
Description -
Location Contig6839: 19674-29066
Sequence    

Annotation

kegg
ID rcu:RCOM_0953140
description importin beta-1, putative
nr
ID XP_012066299.1
description PREDICTED: importin subunit beta-1-like [Jatropha curcas]
swissprot
ID Q9FJD4
description Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1
trembl
ID A0A067L6Q3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23860 PE=4 SV=1
Gene Ontology
ID GO:0005634
description importin subunit beta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53943: 24462-27520 , PASA_asmbl_53944: 27713-28871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006839_010 0.0 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
2 Hb_000059_230 0.0405347404 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
3 Hb_009288_020 0.0530525462 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
4 Hb_004374_110 0.058909546 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
5 Hb_003040_050 0.0594876324 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
6 Hb_005215_010 0.061423464 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
7 Hb_001377_100 0.0658534324 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_000317_100 0.0736516912 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
9 Hb_002874_110 0.0745271899 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
10 Hb_012055_040 0.0759114313 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
11 Hb_002235_200 0.0768376319 - - pattern formation protein, putative [Ricinus communis]
12 Hb_006663_060 0.0771710711 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
13 Hb_012055_110 0.0772820933 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
14 Hb_011174_020 0.0784852217 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
15 Hb_073171_070 0.0789094878 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
16 Hb_000608_300 0.0792547736 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
17 Hb_004044_050 0.0797898618 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
18 Hb_010180_060 0.0806625256 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
19 Hb_001329_250 0.0809252547 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
20 Hb_002817_060 0.081057711 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]

Gene co-expression network

sample Hb_006839_010 Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_006839_010--Hb_000059_230 Hb_009288_020 Hb_009288_020 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_003040_050 Hb_003040_050 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_001377_100 Hb_001377_100 Hb_006839_010--Hb_001377_100 Hb_000059_230--Hb_009288_020 Hb_000684_350 Hb_000684_350 Hb_000059_230--Hb_000684_350 Hb_000059_230--Hb_001377_100 Hb_012055_110 Hb_012055_110 Hb_000059_230--Hb_012055_110 Hb_000059_230--Hb_003040_050 Hb_009288_020--Hb_003040_050 Hb_006663_060 Hb_006663_060 Hb_009288_020--Hb_006663_060 Hb_073171_070 Hb_073171_070 Hb_009288_020--Hb_073171_070 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020 Hb_002235_200 Hb_002235_200 Hb_004374_110--Hb_002235_200 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_012632_010 Hb_012632_010 Hb_004374_110--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_004374_110--Hb_002890_130 Hb_004374_110--Hb_001377_100 Hb_003040_050--Hb_073171_070 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_005215_010--Hb_000317_100 Hb_005215_010--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_005215_010--Hb_011819_020 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.77471 19.0756 10.6204 18.479 14.0325 11.7179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07548 7.0658 11.4247 14.6126 26.2992

CAGE analysis