Hb_006846_020

Information

Type -
Description -
Location Contig6846: 3176-10877
Sequence    

Annotation

kegg
ID rcu:RCOM_1502980
description tyrosyl-DNA phosphodiesterase, putative
nr
ID XP_012090541.1
description PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
swissprot
ID Q9NUW8
description Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2
trembl
ID A0A067JF21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26337 PE=4 SV=1
Gene Ontology
ID GO:0005634
description forkhead-associated domain-containing protein fha domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54052: 3490-3595 , PASA_asmbl_54053: 5173-7779 , PASA_asmbl_54054: 8391-8915 , PASA_asmbl_54055: 8928-9738 , PASA_asmbl_54056: 10081-10206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_020 0.0 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
2 Hb_000038_040 0.0731632061 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_002477_120 0.1204342913 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
4 Hb_007007_080 0.1244369601 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000107_440 0.1257835136 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
6 Hb_004208_140 0.1298466792 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
7 Hb_003207_100 0.1373936727 transcription factor TF Family: TCP PREDICTED: transcription factor TCP9-like [Jatropha curcas]
8 Hb_011716_050 0.1394580366 - - serine acetyltransferase [Hevea brasiliensis]
9 Hb_006935_010 0.1437590617 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
10 Hb_000062_590 0.1530938193 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002639_100 0.1556545234 - - dehydrin [Hevea brasiliensis]
12 Hb_002154_020 0.1559951131 - - protein with unknown function [Ricinus communis]
13 Hb_000272_110 0.1576485956 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
14 Hb_002876_070 0.1620664758 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
15 Hb_005288_020 0.1647443569 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
16 Hb_008667_060 0.1660402675 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
17 Hb_001472_130 0.1671303443 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
18 Hb_000120_160 0.167209651 - - unnamed protein product [Vitis vinifera]
19 Hb_001959_120 0.1701391981 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
20 Hb_002387_040 0.1717240595 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_006846_020 Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_006846_020--Hb_000038_040 Hb_002477_120 Hb_002477_120 Hb_006846_020--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_006846_020--Hb_007007_080 Hb_000107_440 Hb_000107_440 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_006935_010 Hb_006935_010 Hb_000038_040--Hb_006935_010 Hb_000038_040--Hb_000107_440 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100 Hb_008667_060 Hb_008667_060 Hb_002477_120--Hb_008667_060 Hb_002154_020 Hb_002154_020 Hb_002477_120--Hb_002154_020 Hb_000802_190 Hb_000802_190 Hb_002477_120--Hb_000802_190 Hb_002477_120--Hb_007007_080 Hb_004032_310 Hb_004032_310 Hb_002477_120--Hb_004032_310 Hb_002471_140 Hb_002471_140 Hb_002477_120--Hb_002471_140 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_005496_160 Hb_005496_160 Hb_007007_080--Hb_005496_160 Hb_007007_080--Hb_002154_020 Hb_000803_060 Hb_000803_060 Hb_000107_440--Hb_000803_060 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_000107_440--Hb_002477_120 Hb_000107_440--Hb_007007_080 Hb_002900_120 Hb_002900_120 Hb_004208_140--Hb_002900_120 Hb_004774_020 Hb_004774_020 Hb_004208_140--Hb_004774_020 Hb_002387_040 Hb_002387_040 Hb_004208_140--Hb_002387_040 Hb_002042_170 Hb_002042_170 Hb_004208_140--Hb_002042_170 Hb_000156_090 Hb_000156_090 Hb_004208_140--Hb_000156_090 Hb_002766_050 Hb_002766_050 Hb_004208_140--Hb_002766_050 Hb_002876_070 Hb_002876_070 Hb_003207_100--Hb_002876_070 Hb_003207_100--Hb_007007_080 Hb_000272_110 Hb_000272_110 Hb_003207_100--Hb_000272_110 Hb_003207_100--Hb_000038_040 Hb_003207_100--Hb_000069_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285197 3.35276 1.46117 0.774924 0.0991828 0.19505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28062 0.722726 0.365527 1.11004 0.407767

CAGE analysis