Hb_006846_030

Information

Type -
Description -
Location Contig6846: 17160-23495
Sequence    

Annotation

kegg
ID rcu:RCOM_1502990
description respiratory burst oxidase, putative (EC:1.6.3.1)
nr
ID ADR70880.1
description respiratory burst oxidase A [Manihot esculenta]
swissprot
ID Q2HXL0
description Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC PE=1 SV=2
trembl
ID V9HYZ7
description Respiratory burst oxidase A OS=Manihot esculenta GN=RbohA PE=2 SV=1
Gene Ontology
ID GO:0016021
description respiratory burst oxidase homolog protein c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54057: 22540-23506
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_030 0.0 - - respiratory burst oxidase A [Manihot esculenta]
2 Hb_003847_050 0.0595331475 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
3 Hb_012787_050 0.0697162518 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
4 Hb_023956_010 0.0750961951 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_001568_010 0.0786184322 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002448_020 0.0849853675 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_019026_050 0.0948468667 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002553_070 0.1020798479 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
9 Hb_002333_010 0.1074124597 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
10 Hb_085315_010 0.1080252604 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
11 Hb_008727_040 0.1082096556 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007632_130 0.1082744063 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
13 Hb_000014_080 0.1091010099 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
14 Hb_000070_070 0.1158764898 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
15 Hb_000112_050 0.1170623676 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
16 Hb_032260_130 0.1222375457 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
17 Hb_001114_120 0.1232719177 - - protein with unknown function [Ricinus communis]
18 Hb_078361_010 0.1235878463 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
19 Hb_004282_010 0.1239242697 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
20 Hb_065521_010 0.1269783442 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]

Gene co-expression network

sample Hb_006846_030 Hb_006846_030 Hb_003847_050 Hb_003847_050 Hb_006846_030--Hb_003847_050 Hb_012787_050 Hb_012787_050 Hb_006846_030--Hb_012787_050 Hb_023956_010 Hb_023956_010 Hb_006846_030--Hb_023956_010 Hb_001568_010 Hb_001568_010 Hb_006846_030--Hb_001568_010 Hb_002448_020 Hb_002448_020 Hb_006846_030--Hb_002448_020 Hb_019026_050 Hb_019026_050 Hb_006846_030--Hb_019026_050 Hb_003847_050--Hb_023956_010 Hb_003847_050--Hb_001568_010 Hb_003847_050--Hb_012787_050 Hb_003847_050--Hb_019026_050 Hb_003847_050--Hb_002448_020 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_012787_050--Hb_023956_010 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040 Hb_002553_070 Hb_002553_070 Hb_023956_010--Hb_002553_070 Hb_002236_010 Hb_002236_010 Hb_023956_010--Hb_002236_010 Hb_023956_010--Hb_019026_050 Hb_004282_010 Hb_004282_010 Hb_001568_010--Hb_004282_010 Hb_001568_010--Hb_008727_040 Hb_001568_010--Hb_012787_050 Hb_000014_080 Hb_000014_080 Hb_001568_010--Hb_000014_080 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_007386_030 Hb_007386_030 Hb_002448_020--Hb_007386_030 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120 Hb_019026_050--Hb_002553_070 Hb_000120_320 Hb_000120_320 Hb_019026_050--Hb_000120_320 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.00893 1.63212 5.8555 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0121717 0.0287356 0 5.45067 2.19281

CAGE analysis