Hb_006846_050

Information

Type -
Description -
Location Contig6846: 30202-30846
Sequence    

Annotation

kegg
ID rcu:RCOM_1503010
description Rhicadhesin receptor precursor, putative (EC:1.15.1.1)
nr
ID XP_002511061.1
description Rhicadhesin receptor precursor, putative [Ricinus communis]
swissprot
ID Q9FLT3
description Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1
trembl
ID B9RA36
description Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1503010 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 3 member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_050 0.0 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
2 Hb_006618_060 0.0535267439 - - PREDICTED: 21 kDa protein [Jatropha curcas]
3 Hb_006603_010 0.0542178121 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
4 Hb_085158_010 0.0584449124 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_002232_340 0.0627392599 - - Sodium transporter hkt1-like protein, putative [Theobroma cacao]
6 Hb_006970_180 0.0757645372 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
7 Hb_151436_010 0.0784820256 - - PREDICTED: uncharacterized protein LOC105137019 [Populus euphratica]
8 Hb_006889_010 0.0805204667 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
9 Hb_000431_050 0.0810218791 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000905_130 0.084249403 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
11 Hb_000628_080 0.086125003 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
12 Hb_005539_330 0.0907397172 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
13 Hb_170597_010 0.0921270434 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
14 Hb_003050_210 0.0977873792 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
15 Hb_001454_030 0.1002091432 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
16 Hb_000012_340 0.1008133099 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
17 Hb_017524_020 0.1011790562 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
18 Hb_103942_020 0.1026918769 - - unknown [Zea mays]
19 Hb_000083_260 0.1039451872 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004884_050 0.1042823088 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]

Gene co-expression network

sample Hb_006846_050 Hb_006846_050 Hb_006618_060 Hb_006618_060 Hb_006846_050--Hb_006618_060 Hb_006603_010 Hb_006603_010 Hb_006846_050--Hb_006603_010 Hb_085158_010 Hb_085158_010 Hb_006846_050--Hb_085158_010 Hb_002232_340 Hb_002232_340 Hb_006846_050--Hb_002232_340 Hb_006970_180 Hb_006970_180 Hb_006846_050--Hb_006970_180 Hb_151436_010 Hb_151436_010 Hb_006846_050--Hb_151436_010 Hb_006618_060--Hb_002232_340 Hb_006618_060--Hb_006603_010 Hb_000628_080 Hb_000628_080 Hb_006618_060--Hb_000628_080 Hb_170597_010 Hb_170597_010 Hb_006618_060--Hb_170597_010 Hb_006618_060--Hb_085158_010 Hb_006603_010--Hb_006970_180 Hb_006603_010--Hb_151436_010 Hb_006603_010--Hb_085158_010 Hb_006889_010 Hb_006889_010 Hb_006603_010--Hb_006889_010 Hb_000431_050 Hb_000431_050 Hb_085158_010--Hb_000431_050 Hb_085158_010--Hb_151436_010 Hb_085158_010--Hb_006970_180 Hb_085158_010--Hb_006889_010 Hb_002232_340--Hb_170597_010 Hb_002232_340--Hb_006603_010 Hb_006275_080 Hb_006275_080 Hb_002232_340--Hb_006275_080 Hb_025557_090 Hb_025557_090 Hb_002232_340--Hb_025557_090 Hb_006970_180--Hb_151436_010 Hb_022250_140 Hb_022250_140 Hb_006970_180--Hb_022250_140 Hb_006970_180--Hb_000431_050 Hb_002073_210 Hb_002073_210 Hb_006970_180--Hb_002073_210 Hb_151436_010--Hb_000431_050 Hb_151436_010--Hb_002073_210 Hb_151436_010--Hb_022250_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.685543 1.95713 31.9976 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0291639 0.698459

CAGE analysis