Hb_006846_070

Information

Type -
Description -
Location Contig6846: 51886-60093
Sequence    

Annotation

kegg
ID rcu:RCOM_1503040
description ebna2 binding protein P100, putative
nr
ID XP_012090546.1
description PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q863B3
description Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1
trembl
ID A0A067JF85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26343 PE=4 SV=1
Gene Ontology
ID GO:0016442
description staphylococcal nuclease domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54062: 51954-52656 , PASA_asmbl_54063: 53325-60083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_070 0.0 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
2 Hb_000984_270 0.1034151801 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000416_200 0.1054165375 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
4 Hb_004109_260 0.1075782108 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
5 Hb_000061_150 0.108765903 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
6 Hb_000480_040 0.1115317696 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
7 Hb_001604_120 0.1147616114 - - PREDICTED: hemK methyltransferase family member 1 isoform X2 [Jatropha curcas]
8 Hb_004109_120 0.1152510017 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
9 Hb_012305_100 0.1152847736 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
10 Hb_000613_120 0.1176667442 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
11 Hb_000029_110 0.1194187186 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007594_040 0.1206823538 - - calcium lipid binding protein, putative [Ricinus communis]
13 Hb_000853_440 0.1209308522 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
14 Hb_001824_080 0.1211625195 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
15 Hb_031042_060 0.1211894612 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000085_070 0.1220928818 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000108_050 0.1225016839 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
18 Hb_002025_250 0.122711489 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
19 Hb_000116_190 0.123304132 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021650_010 0.1251031036 - - hypothetical protein JCGZ_09648 [Jatropha curcas]

Gene co-expression network

sample Hb_006846_070 Hb_006846_070 Hb_000984_270 Hb_000984_270 Hb_006846_070--Hb_000984_270 Hb_000416_200 Hb_000416_200 Hb_006846_070--Hb_000416_200 Hb_004109_260 Hb_004109_260 Hb_006846_070--Hb_004109_260 Hb_000061_150 Hb_000061_150 Hb_006846_070--Hb_000061_150 Hb_000480_040 Hb_000480_040 Hb_006846_070--Hb_000480_040 Hb_001604_120 Hb_001604_120 Hb_006846_070--Hb_001604_120 Hb_000984_270--Hb_001604_120 Hb_000613_010 Hb_000613_010 Hb_000984_270--Hb_000613_010 Hb_000108_050 Hb_000108_050 Hb_000984_270--Hb_000108_050 Hb_005672_020 Hb_005672_020 Hb_000984_270--Hb_005672_020 Hb_000135_030 Hb_000135_030 Hb_000984_270--Hb_000135_030 Hb_001824_080 Hb_001824_080 Hb_000416_200--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_000416_200--Hb_004109_120 Hb_007821_020 Hb_007821_020 Hb_000416_200--Hb_007821_020 Hb_000880_070 Hb_000880_070 Hb_000416_200--Hb_000880_070 Hb_001348_080 Hb_001348_080 Hb_000416_200--Hb_001348_080 Hb_000567_070 Hb_000567_070 Hb_000416_200--Hb_000567_070 Hb_004109_260--Hb_001824_080 Hb_004339_040 Hb_004339_040 Hb_004109_260--Hb_004339_040 Hb_000802_130 Hb_000802_130 Hb_004109_260--Hb_000802_130 Hb_000613_120 Hb_000613_120 Hb_004109_260--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_004109_260--Hb_001438_010 Hb_004109_260--Hb_000880_070 Hb_000194_010 Hb_000194_010 Hb_000061_150--Hb_000194_010 Hb_007594_040 Hb_007594_040 Hb_000061_150--Hb_007594_040 Hb_002044_020 Hb_002044_020 Hb_000061_150--Hb_002044_020 Hb_005527_010 Hb_005527_010 Hb_000061_150--Hb_005527_010 Hb_001454_150 Hb_001454_150 Hb_000061_150--Hb_001454_150 Hb_000309_020 Hb_000309_020 Hb_000480_040--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000480_040--Hb_011861_050 Hb_000085_070 Hb_000085_070 Hb_000480_040--Hb_000085_070 Hb_000941_100 Hb_000941_100 Hb_000480_040--Hb_000941_100 Hb_001195_770 Hb_001195_770 Hb_000480_040--Hb_001195_770 Hb_000108_020 Hb_000108_020 Hb_000480_040--Hb_000108_020 Hb_000181_240 Hb_000181_240 Hb_001604_120--Hb_000181_240 Hb_002498_140 Hb_002498_140 Hb_001604_120--Hb_002498_140 Hb_000015_100 Hb_000015_100 Hb_001604_120--Hb_000015_100 Hb_000445_140 Hb_000445_140 Hb_001604_120--Hb_000445_140 Hb_001604_120--Hb_000416_200 Hb_000365_100 Hb_000365_100 Hb_001604_120--Hb_000365_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.03617 3.34802 25.1773 11.6007 10.9567 11.8391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.76649 5.0094 10.3758 10.3276 27.1837

CAGE analysis