Hb_006846_090

Information

Type -
Description -
Location Contig6846: 88413-89244
Sequence    

Annotation

kegg
ID rcu:RCOM_1503100
description hypothetical protein
nr
ID XP_012090551.1
description PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JF28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26347 PE=4 SV=1
Gene Ontology
ID GO:0006950
description nfu1 iron-sulfur mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54066: 88383-89289
cDNA
(Sanger)
(ID:Location)		 001_J09.ab1: 88476-89287 , 008_K20.ab1: 88559-89289 , 011_F13.ab1: 88382-89219 , 018_I08.ab1: 88537-89289 , 025_I05.ab1: 88470-89289 , 027_H10.ab1: 88733-89289 , 036_M23.ab1: 88493-89286 , 038_A22.ab1: 88523-89289 , 043_L19.ab1: 88470-89289 , 046_F20.ab1: 88493-89292 , 051_P18.ab1: 88410-89027 , 053_H05.ab1: 88512-89289

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_090 0.0 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
2 Hb_009680_030 0.1211031973 - - PREDICTED: heat shock protein 83-like [Jatropha curcas]
3 Hb_002983_020 0.1873274703 - - PREDICTED: probable disease resistance protein At5g63020 [Populus euphratica]
4 Hb_002311_250 0.1926924988 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
5 Hb_000317_080 0.1927970279 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
6 Hb_029388_040 0.194307427 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
7 Hb_164732_010 0.1968831499 - - -
8 Hb_019153_040 0.1985167039 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
9 Hb_002374_440 0.1985757961 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000739_290 0.2016576861 - - cytochrome P450, putative [Ricinus communis]
11 Hb_004648_040 0.2030931701 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
12 Hb_053543_010 0.2034770334 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001268_230 0.2083223031 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_003992_260 0.2117426706 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
15 Hb_005228_100 0.2126190195 - - -
16 Hb_000395_140 0.2130596194 - - Oligopeptide transporter, putative [Ricinus communis]
17 Hb_001946_360 0.214837548 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
18 Hb_098315_110 0.2150160277 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000176_170 0.2165920314 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
20 Hb_000038_030 0.2166663698 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]

Gene co-expression network

sample Hb_006846_090 Hb_006846_090 Hb_009680_030 Hb_009680_030 Hb_006846_090--Hb_009680_030 Hb_002983_020 Hb_002983_020 Hb_006846_090--Hb_002983_020 Hb_002311_250 Hb_002311_250 Hb_006846_090--Hb_002311_250 Hb_000317_080 Hb_000317_080 Hb_006846_090--Hb_000317_080 Hb_029388_040 Hb_029388_040 Hb_006846_090--Hb_029388_040 Hb_164732_010 Hb_164732_010 Hb_006846_090--Hb_164732_010 Hb_009680_030--Hb_002983_020 Hb_019153_040 Hb_019153_040 Hb_009680_030--Hb_019153_040 Hb_009680_030--Hb_002311_250 Hb_010931_110 Hb_010931_110 Hb_009680_030--Hb_010931_110 Hb_000300_530 Hb_000300_530 Hb_009680_030--Hb_000300_530 Hb_002983_020--Hb_019153_040 Hb_002983_020--Hb_000300_530 Hb_003125_050 Hb_003125_050 Hb_002983_020--Hb_003125_050 Hb_002983_020--Hb_010931_110 Hb_053543_010 Hb_053543_010 Hb_002983_020--Hb_053543_010 Hb_011457_160 Hb_011457_160 Hb_002311_250--Hb_011457_160 Hb_001946_360 Hb_001946_360 Hb_002311_250--Hb_001946_360 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002374_440 Hb_002374_440 Hb_002311_250--Hb_002374_440 Hb_002239_040 Hb_002239_040 Hb_002311_250--Hb_002239_040 Hb_001268_230 Hb_001268_230 Hb_000317_080--Hb_001268_230 Hb_098315_110 Hb_098315_110 Hb_000317_080--Hb_098315_110 Hb_000317_080--Hb_053543_010 Hb_000987_050 Hb_000987_050 Hb_000317_080--Hb_000987_050 Hb_004648_040 Hb_004648_040 Hb_000317_080--Hb_004648_040 Hb_001628_110 Hb_001628_110 Hb_000317_080--Hb_001628_110 Hb_029388_040--Hb_002374_440 Hb_005228_100 Hb_005228_100 Hb_029388_040--Hb_005228_100 Hb_012340_020 Hb_012340_020 Hb_029388_040--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_029388_040--Hb_106321_030 Hb_000152_560 Hb_000152_560 Hb_029388_040--Hb_000152_560 Hb_002168_020 Hb_002168_020 Hb_029388_040--Hb_002168_020 Hb_164732_010--Hb_019153_040 Hb_000300_330 Hb_000300_330 Hb_164732_010--Hb_000300_330 Hb_000567_160 Hb_000567_160 Hb_164732_010--Hb_000567_160 Hb_164732_010--Hb_002983_020 Hb_164732_010--Hb_009680_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
421.705 309.147 1.3596 33.435 3589.29 1593.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
478.613 367.41 1035.15 265.589 9.36841

CAGE analysis