Hb_006846_130

Information

Type -
Description -
Location Contig6846: 112714-115621
Sequence    

Annotation

kegg
ID rcu:RCOM_1503180
description carbonyl reductase, putative (EC:1.1.1.189)
nr
ID XP_012090570.1
description PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
swissprot
ID Q9ZUH5
description Short-chain dehydrogenase/reductase 2b OS=Arabidopsis thaliana GN=SDR2b PE=2 SV=1
trembl
ID E6NU09
description JHL07K02.9 protein OS=Jatropha curcas GN=JHL07K02.9 PE=3 SV=1
Gene Ontology
ID GO:0005737
description carbonyl reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54075: 112743-115615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_130 0.0 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
2 Hb_002301_150 0.0686676768 - - Drought-responsive family protein [Theobroma cacao]
3 Hb_000076_220 0.0751843411 - - thioredoxin domain-containing protein, putative [Ricinus communis]
4 Hb_000130_270 0.0788494511 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_006573_190 0.0834767255 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
6 Hb_003582_060 0.0838433967 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_001931_010 0.0842620442 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
8 Hb_004108_220 0.084769553 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
9 Hb_003878_090 0.0857672584 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
10 Hb_007894_060 0.0859617435 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
11 Hb_000365_270 0.0865913477 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
12 Hb_005588_060 0.0872946586 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
13 Hb_003058_120 0.0874123573 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
14 Hb_001472_100 0.0888828281 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
15 Hb_000946_090 0.0903820399 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
16 Hb_017895_040 0.0914965424 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
17 Hb_004109_220 0.0915693808 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
18 Hb_000270_310 0.091866786 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
19 Hb_000069_720 0.092013923 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
20 Hb_000580_020 0.0931164333 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_006846_130 Hb_006846_130 Hb_002301_150 Hb_002301_150 Hb_006846_130--Hb_002301_150 Hb_000076_220 Hb_000076_220 Hb_006846_130--Hb_000076_220 Hb_000130_270 Hb_000130_270 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010 Hb_008013_050 Hb_008013_050 Hb_002301_150--Hb_008013_050 Hb_003502_060 Hb_003502_060 Hb_002301_150--Hb_003502_060 Hb_004108_220 Hb_004108_220 Hb_002301_150--Hb_004108_220 Hb_000030_030 Hb_000030_030 Hb_002301_150--Hb_000030_030 Hb_168978_010 Hb_168978_010 Hb_002301_150--Hb_168978_010 Hb_003058_120 Hb_003058_120 Hb_000076_220--Hb_003058_120 Hb_000853_150 Hb_000853_150 Hb_000076_220--Hb_000853_150 Hb_000774_020 Hb_000774_020 Hb_000076_220--Hb_000774_020 Hb_000076_220--Hb_000130_270 Hb_000260_470 Hb_000260_470 Hb_000076_220--Hb_000260_470 Hb_032202_100 Hb_032202_100 Hb_000130_270--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_000390_300 Hb_000390_300 Hb_006573_190--Hb_000390_300 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_008071_020 Hb_008071_020 Hb_001931_010--Hb_008071_020 Hb_006326_040 Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93846 4.82578 9.57259 11.298 4.16965 4.15725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.89298 12.9114 6.19645 7.49067 7.2872

CAGE analysis