Hb_006873_030

Information

Type -
Description -
Location Contig6873: 22011-24928
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_002529765.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID P0CH02
description Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana GN=ATL21B PE=3 SV=1
trembl
ID B9SUU6
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_0574930 PE=3 SV=1
Gene Ontology
ID GO:0016772
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54116: 23833-24570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006873_030 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_003811_030 0.1034136717 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
3 Hb_012496_010 0.1155970236 - - kinase, putative [Ricinus communis]
4 Hb_039650_030 0.1213414095 - - hypothetical protein RCOM_2128750 [Ricinus communis]
5 Hb_113396_020 0.1295805374 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
6 Hb_035677_010 0.130605074 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000247_150 0.1378772542 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
8 Hb_001004_010 0.137979551 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003929_040 0.1391294321 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
10 Hb_006907_020 0.1442881485 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
11 Hb_107552_020 0.1505390755 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
12 Hb_004924_030 0.1506912701 - - -
13 Hb_097007_020 0.1544538815 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
14 Hb_091913_010 0.1572975176 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_008897_020 0.1635054425 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
16 Hb_000175_250 0.1659925209 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
17 Hb_019026_040 0.1669506318 - - S-locus lectin protein kinase family protein [Theobroma cacao]
18 Hb_090306_010 0.1699814837 - - hypothetical protein POPTR_0007s02300g [Populus trichocarpa]
19 Hb_000127_220 0.1705751049 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
20 Hb_000465_100 0.1716382196 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_006873_030 Hb_006873_030 Hb_003811_030 Hb_003811_030 Hb_006873_030--Hb_003811_030 Hb_012496_010 Hb_012496_010 Hb_006873_030--Hb_012496_010 Hb_039650_030 Hb_039650_030 Hb_006873_030--Hb_039650_030 Hb_113396_020 Hb_113396_020 Hb_006873_030--Hb_113396_020 Hb_035677_010 Hb_035677_010 Hb_006873_030--Hb_035677_010 Hb_000247_150 Hb_000247_150 Hb_006873_030--Hb_000247_150 Hb_019026_040 Hb_019026_040 Hb_003811_030--Hb_019026_040 Hb_107552_020 Hb_107552_020 Hb_003811_030--Hb_107552_020 Hb_003929_040 Hb_003929_040 Hb_003811_030--Hb_003929_040 Hb_036492_020 Hb_036492_020 Hb_003811_030--Hb_036492_020 Hb_010175_050 Hb_010175_050 Hb_003811_030--Hb_010175_050 Hb_012496_010--Hb_035677_010 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_006907_020 Hb_006907_020 Hb_012496_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050 Hb_000175_250 Hb_000175_250 Hb_039650_030--Hb_000175_250 Hb_004924_030 Hb_004924_030 Hb_039650_030--Hb_004924_030 Hb_039650_030--Hb_000247_150 Hb_039650_030--Hb_035677_010 Hb_007328_010 Hb_007328_010 Hb_039650_030--Hb_007328_010 Hb_048538_010 Hb_048538_010 Hb_113396_020--Hb_048538_010 Hb_002849_030 Hb_002849_030 Hb_113396_020--Hb_002849_030 Hb_113396_020--Hb_000422_050 Hb_008897_020 Hb_008897_020 Hb_113396_020--Hb_008897_020 Hb_113396_020--Hb_000127_220 Hb_035677_010--Hb_000247_150 Hb_097007_020 Hb_097007_020 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_013720_010 Hb_013720_010 Hb_035677_010--Hb_013720_010 Hb_004899_360 Hb_004899_360 Hb_035677_010--Hb_004899_360 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_000247_150--Hb_097007_020 Hb_000247_150--Hb_012496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.8468 3.12529 1.13233 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0171949 0 0.0478733 2.69136

CAGE analysis