Hb_006882_010

Information

Type -
Description -
Location Contig6882: 22268-26451
Sequence    

Annotation

kegg
ID csv:101227314
description dnaJ homolog subfamily B member 13-like
nr
ID XP_004144520.1
description PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
swissprot
ID Q80Y75
description DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1
trembl
ID A0A0A0K5C1
description Uncharacterized protein OS=Cucumis sativus GN=Csa_7G039200 PE=4 SV=1
Gene Ontology
ID GO:0005737
description dnaj homolog subfamily b member 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54137: 22288-26451
cDNA
(Sanger)
(ID:Location)		 008_L11.ab1: 22321-23262

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006882_010 0.0 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
2 Hb_078477_040 0.081348506 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_000329_490 0.0823587319 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
4 Hb_022250_110 0.0915946367 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
5 Hb_001901_080 0.0926716488 - - PREDICTED: xylose isomerase [Jatropha curcas]
6 Hb_006002_030 0.0941821581 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
7 Hb_001196_060 0.0952855046 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
8 Hb_001278_060 0.0969332625 - - nucleotide binding protein, putative [Ricinus communis]
9 Hb_031069_020 0.0975849175 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
10 Hb_001433_190 0.0989412478 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
11 Hb_000108_080 0.0994599036 - - PREDICTED: importin-5 [Jatropha curcas]
12 Hb_005462_020 0.1047874967 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
13 Hb_007668_020 0.1061512323 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
14 Hb_005129_050 0.1117716273 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
15 Hb_000037_110 0.1121271133 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
16 Hb_000300_580 0.1128292511 - - PREDICTED: importin-5-like [Jatropha curcas]
17 Hb_004143_070 0.1141860961 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000029_320 0.1142106597 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_002883_010 0.1160915813 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
20 Hb_006829_090 0.1166125627 - - PREDICTED: protein MOS2 [Jatropha curcas]

Gene co-expression network

sample Hb_006882_010 Hb_006882_010 Hb_078477_040 Hb_078477_040 Hb_006882_010--Hb_078477_040 Hb_000329_490 Hb_000329_490 Hb_006882_010--Hb_000329_490 Hb_022250_110 Hb_022250_110 Hb_006882_010--Hb_022250_110 Hb_001901_080 Hb_001901_080 Hb_006882_010--Hb_001901_080 Hb_006002_030 Hb_006002_030 Hb_006882_010--Hb_006002_030 Hb_001196_060 Hb_001196_060 Hb_006882_010--Hb_001196_060 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_001489_070 Hb_001489_070 Hb_078477_040--Hb_001489_070 Hb_078477_040--Hb_022250_110 Hb_000329_490--Hb_022250_110 Hb_006114_020 Hb_006114_020 Hb_000329_490--Hb_006114_020 Hb_000029_320 Hb_000029_320 Hb_000329_490--Hb_000029_320 Hb_000300_580 Hb_000300_580 Hb_000329_490--Hb_000300_580 Hb_002070_070 Hb_002070_070 Hb_000329_490--Hb_002070_070 Hb_000209_070 Hb_000209_070 Hb_022250_110--Hb_000209_070 Hb_022250_110--Hb_000029_320 Hb_003018_160 Hb_003018_160 Hb_022250_110--Hb_003018_160 Hb_022250_110--Hb_006002_030 Hb_031069_020 Hb_031069_020 Hb_001901_080--Hb_031069_020 Hb_001901_080--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001901_080--Hb_001731_020 Hb_001901_080--Hb_001489_070 Hb_001901_080--Hb_006002_030 Hb_006002_030--Hb_001278_060 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_002188_090 Hb_002188_090 Hb_001196_060--Hb_002188_090 Hb_000250_070 Hb_000250_070 Hb_001196_060--Hb_000250_070 Hb_004970_160 Hb_004970_160 Hb_001196_060--Hb_004970_160 Hb_000487_220 Hb_000487_220 Hb_001196_060--Hb_000487_220 Hb_000475_020 Hb_000475_020 Hb_001196_060--Hb_000475_020 Hb_001196_060--Hb_031069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
173.573 77.0225 37.6631 55.7856 305.048 263.761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3052 23.3648 39.3742 76.3071 66.3562

CAGE analysis