Hb_006882_020

Information

Type -
Description -
Location Contig6882: 29149-35714
Sequence    

Annotation

kegg
ID rcu:RCOM_0833080
description hypothetical protein
nr
ID XP_002527040.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7TPD0
description Integrator complex subunit 3 OS=Mus musculus GN=Ints3 PE=2 SV=2
trembl
ID B9SM21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0833080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54138: 28888-29348 , PASA_asmbl_54139: 29361-29572 , PASA_asmbl_54141: 29683-30067 , PASA_asmbl_54142: 30443-30610 , PASA_asmbl_54144: 32399-33210 , PASA_asmbl_54145: 36007-36377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006882_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003371_110 0.0594006945 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
3 Hb_004453_110 0.073031646 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
4 Hb_007943_110 0.0732590476 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
5 Hb_008112_030 0.0733720208 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000429_220 0.0737957078 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
7 Hb_003029_110 0.0741498804 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
8 Hb_000768_070 0.0742036958 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
9 Hb_000166_130 0.0744146547 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010222_050 0.0757526764 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
11 Hb_001195_320 0.0765260343 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
12 Hb_000896_080 0.0766567707 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
13 Hb_002174_020 0.0769534308 - - ring finger protein, putative [Ricinus communis]
14 Hb_000183_020 0.0777781605 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
15 Hb_002823_030 0.0783298881 - - -
16 Hb_002615_090 0.0786717236 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
17 Hb_003044_020 0.0800474224 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
18 Hb_014361_070 0.0808205063 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
19 Hb_000264_030 0.0819219875 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
20 Hb_000085_150 0.084319994 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]

Gene co-expression network

sample Hb_006882_020 Hb_006882_020 Hb_003371_110 Hb_003371_110 Hb_006882_020--Hb_003371_110 Hb_004453_110 Hb_004453_110 Hb_006882_020--Hb_004453_110 Hb_007943_110 Hb_007943_110 Hb_006882_020--Hb_007943_110 Hb_008112_030 Hb_008112_030 Hb_006882_020--Hb_008112_030 Hb_000429_220 Hb_000429_220 Hb_006882_020--Hb_000429_220 Hb_003029_110 Hb_003029_110 Hb_006882_020--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_004453_110--Hb_000429_220 Hb_005731_090 Hb_005731_090 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_002174_020 Hb_002174_020 Hb_004453_110--Hb_002174_020 Hb_004453_110--Hb_008112_030 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_007943_110--Hb_014361_070 Hb_000060_090 Hb_000060_090 Hb_007943_110--Hb_000060_090 Hb_007943_110--Hb_003371_110 Hb_007943_110--Hb_003029_110 Hb_006909_070 Hb_006909_070 Hb_007943_110--Hb_006909_070 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_008112_030--Hb_005731_090 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_009175_020 Hb_009175_020 Hb_000429_220--Hb_009175_020 Hb_000429_220--Hb_089140_050 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_027380_140 Hb_027380_140 Hb_000429_220--Hb_027380_140 Hb_000429_220--Hb_002823_030 Hb_003029_110--Hb_000166_130 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_000343_120 Hb_000343_120 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003029_110--Hb_003371_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11647 2.98989 1.45229 1.86582 3.02 3.6733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24934 1.79687 1.48145 1.4435 2.27057

CAGE analysis