Hb_006889_030

Information

Type -
Description -
Location Contig6889: 35673-43169
Sequence    

Annotation

kegg
ID rcu:RCOM_0476540
description Aspartic proteinase Asp1 precursor, putative (EC:3.4.23.3)
nr
ID XP_002523756.1
description Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID B9SCN7
description Aspartic proteinase Asp1, putative OS=Ricinus communis GN=RCOM_0476540 PE=4 SV=1
Gene Ontology
ID GO:0008233
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54151: 35772-43087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006889_030 0.0 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
2 Hb_001119_070 0.1283162926 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
3 Hb_001459_090 0.1293251864 - - unnamed protein product [Vitis vinifera]
4 Hb_000098_170 0.1309218527 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
5 Hb_000049_270 0.1321210796 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
6 Hb_000236_180 0.1373871671 - - serine hydroxymethyltransferase, putative [Ricinus communis]
7 Hb_031284_030 0.1385499444 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006615_230 0.1399114314 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_000023_110 0.1409270232 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
10 Hb_006351_020 0.1447388087 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_000327_360 0.1468276467 - - unnamed protein product [Coffea canephora]
12 Hb_000959_130 0.1492527892 - - organic anion transporter, putative [Ricinus communis]
13 Hb_134014_010 0.1492960279 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_006570_090 0.1495730826 - - tubulin beta chain, putative [Ricinus communis]
15 Hb_042083_030 0.1540844174 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_010883_180 0.1563197767 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
17 Hb_000417_380 0.1595676648 - - SecY protein transport family protein [Theobroma cacao]
18 Hb_011930_180 0.1606953888 - - conserved hypothetical protein [Ricinus communis]
19 Hb_030565_100 0.1608881388 - - serine hydroxymethyltransferase, putative [Ricinus communis]
20 Hb_061222_010 0.1617199752 - - hypothetical protein RCOM_0012650 [Ricinus communis]

Gene co-expression network

sample Hb_006889_030 Hb_006889_030 Hb_001119_070 Hb_001119_070 Hb_006889_030--Hb_001119_070 Hb_001459_090 Hb_001459_090 Hb_006889_030--Hb_001459_090 Hb_000098_170 Hb_000098_170 Hb_006889_030--Hb_000098_170 Hb_000049_270 Hb_000049_270 Hb_006889_030--Hb_000049_270 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_031284_030 Hb_031284_030 Hb_006889_030--Hb_031284_030 Hb_006351_020 Hb_006351_020 Hb_001119_070--Hb_006351_020 Hb_006615_230 Hb_006615_230 Hb_001119_070--Hb_006615_230 Hb_158092_040 Hb_158092_040 Hb_001119_070--Hb_158092_040 Hb_000806_130 Hb_000806_130 Hb_001119_070--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001119_070--Hb_000696_070 Hb_189003_070 Hb_189003_070 Hb_001119_070--Hb_189003_070 Hb_000152_710 Hb_000152_710 Hb_001459_090--Hb_000152_710 Hb_003929_180 Hb_003929_180 Hb_001459_090--Hb_003929_180 Hb_000638_060 Hb_000638_060 Hb_001459_090--Hb_000638_060 Hb_001459_090--Hb_006351_020 Hb_002641_160 Hb_002641_160 Hb_001459_090--Hb_002641_160 Hb_004007_070 Hb_004007_070 Hb_000098_170--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_000098_170--Hb_000086_090 Hb_000098_170--Hb_000049_270 Hb_006570_090 Hb_006570_090 Hb_000098_170--Hb_006570_090 Hb_012395_110 Hb_012395_110 Hb_000098_170--Hb_012395_110 Hb_000049_270--Hb_006570_090 Hb_000049_270--Hb_004007_070 Hb_000023_110 Hb_000023_110 Hb_000049_270--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_000049_270--Hb_012807_150 Hb_000580_110 Hb_000580_110 Hb_000236_180--Hb_000580_110 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000236_180--Hb_030565_100 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_000236_180--Hb_006615_230 Hb_000077_100 Hb_000077_100 Hb_000236_180--Hb_000077_100 Hb_031284_030--Hb_006351_020 Hb_031284_030--Hb_000023_110 Hb_001450_040 Hb_001450_040 Hb_031284_030--Hb_001450_040 Hb_000152_190 Hb_000152_190 Hb_031284_030--Hb_000152_190 Hb_000327_360 Hb_000327_360 Hb_031284_030--Hb_000327_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134688 1.84715 5.37958 15.3758 1.24898 0.532908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.392014 0.39068 2.17521 2.91622 5.97176

CAGE analysis