Hb_006905_030

Information

Type -
Description -
Location Contig6905: 107805-108888
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006905_030 0.0 - - -
2 Hb_006573_150 0.1166246344 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
3 Hb_005601_020 0.1191208417 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
4 Hb_001981_040 0.1259818384 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
5 Hb_167103_010 0.126744234 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
6 Hb_000062_510 0.1305033455 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
7 Hb_114893_040 0.131446721 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
8 Hb_007101_080 0.1359573617 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
9 Hb_003038_160 0.1369420616 - - auxilin, putative [Ricinus communis]
10 Hb_007741_120 0.1385565325 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_000984_270 0.1414501437 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004218_190 0.1421388273 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
13 Hb_000365_240 0.1447487403 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
14 Hb_001438_010 0.1450057222 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
15 Hb_000046_540 0.1468616673 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
16 Hb_006846_070 0.1470597629 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
17 Hb_002078_340 0.1473704621 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
18 Hb_000181_100 0.150383401 - - PREDICTED: protein starmaker [Jatropha curcas]
19 Hb_171215_010 0.15186891 - - vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_000207_300 0.1558236893 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_006905_030 Hb_006905_030 Hb_006573_150 Hb_006573_150 Hb_006905_030--Hb_006573_150 Hb_005601_020 Hb_005601_020 Hb_006905_030--Hb_005601_020 Hb_001981_040 Hb_001981_040 Hb_006905_030--Hb_001981_040 Hb_167103_010 Hb_167103_010 Hb_006905_030--Hb_167103_010 Hb_000062_510 Hb_000062_510 Hb_006905_030--Hb_000062_510 Hb_114893_040 Hb_114893_040 Hb_006905_030--Hb_114893_040 Hb_007741_120 Hb_007741_120 Hb_006573_150--Hb_007741_120 Hb_012733_040 Hb_012733_040 Hb_006573_150--Hb_012733_040 Hb_003159_050 Hb_003159_050 Hb_006573_150--Hb_003159_050 Hb_007741_110 Hb_007741_110 Hb_006573_150--Hb_007741_110 Hb_000364_050 Hb_000364_050 Hb_006573_150--Hb_000364_050 Hb_012150_030 Hb_012150_030 Hb_006573_150--Hb_012150_030 Hb_000181_100 Hb_000181_100 Hb_005601_020--Hb_000181_100 Hb_000254_100 Hb_000254_100 Hb_005601_020--Hb_000254_100 Hb_031091_020 Hb_031091_020 Hb_005601_020--Hb_031091_020 Hb_004109_120 Hb_004109_120 Hb_005601_020--Hb_004109_120 Hb_001014_100 Hb_001014_100 Hb_005601_020--Hb_001014_100 Hb_000207_300 Hb_000207_300 Hb_005601_020--Hb_000207_300 Hb_000205_140 Hb_000205_140 Hb_001981_040--Hb_000205_140 Hb_079526_040 Hb_079526_040 Hb_001981_040--Hb_079526_040 Hb_000637_150 Hb_000637_150 Hb_001981_040--Hb_000637_150 Hb_001981_040--Hb_031091_020 Hb_001518_080 Hb_001518_080 Hb_001981_040--Hb_001518_080 Hb_001981_040--Hb_000207_300 Hb_000529_180 Hb_000529_180 Hb_167103_010--Hb_000529_180 Hb_000613_120 Hb_000613_120 Hb_167103_010--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_167103_010--Hb_001438_010 Hb_004109_260 Hb_004109_260 Hb_167103_010--Hb_004109_260 Hb_002660_190 Hb_002660_190 Hb_167103_010--Hb_002660_190 Hb_000896_050 Hb_000896_050 Hb_000062_510--Hb_000896_050 Hb_000359_210 Hb_000359_210 Hb_000062_510--Hb_000359_210 Hb_003106_190 Hb_003106_190 Hb_000062_510--Hb_003106_190 Hb_000062_510--Hb_007741_120 Hb_023988_030 Hb_023988_030 Hb_000062_510--Hb_023988_030 Hb_000062_510--Hb_003159_050 Hb_002835_160 Hb_002835_160 Hb_114893_040--Hb_002835_160 Hb_003025_140 Hb_003025_140 Hb_114893_040--Hb_003025_140 Hb_000085_070 Hb_000085_070 Hb_114893_040--Hb_000085_070 Hb_189003_060 Hb_189003_060 Hb_114893_040--Hb_189003_060 Hb_011861_050 Hb_011861_050 Hb_114893_040--Hb_011861_050 Hb_000480_040 Hb_000480_040 Hb_114893_040--Hb_000480_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47998 0.38484 1.55375 0.969103 0.730359 0.648752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.522311 0.547001 1.11764 1.44687 2.95102

CAGE analysis