Hb_006907_020

Information

Type -
Description -
Location Contig6907: 8981-10757
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00460g
description aminocyclopropane carboxylate oxidase family protein
nr
ID ABK59094.1
description 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
swissprot
ID P31237
description 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1
trembl
ID A0SWU5
description 1-amino-cyclopropane-1-carboxylic acid oxidase 3 OS=Manihot esculenta GN=ACCO3 PE=3 SV=1
Gene Ontology
ID GO:0009815
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54321: 9052-10789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_020 0.0 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
2 Hb_012496_010 0.1039702527 - - kinase, putative [Ricinus communis]
3 Hb_097007_020 0.11186583 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
4 Hb_029664_010 0.1139313507 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_035677_010 0.1198113284 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001004_010 0.1248487636 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004899_360 0.1333461474 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_008143_020 0.1334999634 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
9 Hb_000247_150 0.1352180498 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
10 Hb_003811_030 0.1370336774 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
11 Hb_008202_020 0.1376349438 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_000571_030 0.1396963935 - - ammonium transporter, putative [Ricinus communis]
13 Hb_000340_060 0.1397615623 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000032_230 0.1417119081 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
15 Hb_000465_100 0.1420289917 - - catalytic, putative [Ricinus communis]
16 Hb_000127_220 0.14267626 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
17 Hb_006873_030 0.1442881485 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_000836_310 0.1443703034 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
19 Hb_000402_180 0.1459395015 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
20 Hb_003929_040 0.1472137831 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006907_020 Hb_006907_020 Hb_012496_010 Hb_012496_010 Hb_006907_020--Hb_012496_010 Hb_097007_020 Hb_097007_020 Hb_006907_020--Hb_097007_020 Hb_029664_010 Hb_029664_010 Hb_006907_020--Hb_029664_010 Hb_035677_010 Hb_035677_010 Hb_006907_020--Hb_035677_010 Hb_001004_010 Hb_001004_010 Hb_006907_020--Hb_001004_010 Hb_004899_360 Hb_004899_360 Hb_006907_020--Hb_004899_360 Hb_012496_010--Hb_035677_010 Hb_113396_020 Hb_113396_020 Hb_012496_010--Hb_113396_020 Hb_000836_310 Hb_000836_310 Hb_012496_010--Hb_000836_310 Hb_000127_220 Hb_000127_220 Hb_012496_010--Hb_000127_220 Hb_000422_050 Hb_000422_050 Hb_012496_010--Hb_000422_050 Hb_097007_020--Hb_035677_010 Hb_097007_020--Hb_004899_360 Hb_000247_150 Hb_000247_150 Hb_097007_020--Hb_000247_150 Hb_097007_020--Hb_012496_010 Hb_000571_030 Hb_000571_030 Hb_097007_020--Hb_000571_030 Hb_001153_250 Hb_001153_250 Hb_029664_010--Hb_001153_250 Hb_000627_130 Hb_000627_130 Hb_029664_010--Hb_000627_130 Hb_007858_020 Hb_007858_020 Hb_029664_010--Hb_007858_020 Hb_008202_020 Hb_008202_020 Hb_029664_010--Hb_008202_020 Hb_124953_010 Hb_124953_010 Hb_029664_010--Hb_124953_010 Hb_035677_010--Hb_000247_150 Hb_035677_010--Hb_000571_030 Hb_013720_010 Hb_013720_010 Hb_035677_010--Hb_013720_010 Hb_035677_010--Hb_004899_360 Hb_001004_010--Hb_012496_010 Hb_008143_020 Hb_008143_020 Hb_001004_010--Hb_008143_020 Hb_001004_010--Hb_113396_020 Hb_001004_010--Hb_000422_050 Hb_000340_060 Hb_000340_060 Hb_001004_010--Hb_000340_060 Hb_004899_360--Hb_008202_020 Hb_004109_240 Hb_004109_240 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_001619_140 Hb_001619_140 Hb_004899_360--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_004899_360--Hb_002010_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280399 141.036 65.0475 20.8915 1.7748 0.588816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0350488 0.0275723 0 0.947878 21.7075

CAGE analysis