Hb_006907_130

Information

Type -
Description -
Location Contig6907: 83281-86171
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G082700g
description hypothetical protein
nr
ID CDP04465.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q49117
description Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2
trembl
ID A0A068U7D8
description Coffea canephora DH200=94 genomic scaffold, scaffold_12 OS=Coffea canephora GN=GSCOC_T00017868001 PE=4 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54326: 83477-86187
cDNA
(Sanger)
(ID:Location)		 005_P12.ab1: 83477-85881 , 047_C08.ab1: 83477-85894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_130 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_015934_070 0.0647185393 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
3 Hb_031862_100 0.0665565552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002000_080 0.0713359975 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
5 Hb_001386_040 0.081403199 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
6 Hb_002111_040 0.0837158135 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
7 Hb_001545_080 0.0838344909 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
8 Hb_000053_020 0.0851771795 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_002014_020 0.0862986671 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
10 Hb_089995_010 0.0871120814 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
11 Hb_002183_060 0.0871900528 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
12 Hb_001369_690 0.090908172 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_000363_360 0.0909098703 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
14 Hb_005914_170 0.0910537737 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
15 Hb_127552_030 0.0940664746 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_019654_030 0.0960586464 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
17 Hb_001545_170 0.0971103975 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
18 Hb_001653_020 0.0972532807 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
19 Hb_001006_190 0.0976583417 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
20 Hb_002481_080 0.0985743966 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_006907_130 Hb_006907_130 Hb_015934_070 Hb_015934_070 Hb_006907_130--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_006907_130--Hb_031862_100 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_001386_040 Hb_001386_040 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_015934_070--Hb_031862_100 Hb_025240_040 Hb_025240_040 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690 Hb_031862_100--Hb_001386_040 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_165928_030 Hb_165928_030 Hb_002000_080--Hb_165928_030 Hb_011671_180 Hb_011671_180 Hb_002000_080--Hb_011671_180 Hb_002481_080 Hb_002481_080 Hb_002000_080--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_002000_080--Hb_073973_100 Hb_003294_070 Hb_003294_070 Hb_002000_080--Hb_003294_070 Hb_000948_160 Hb_000948_160 Hb_001386_040--Hb_000948_160 Hb_002183_060 Hb_002183_060 Hb_001386_040--Hb_002183_060 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_001386_040--Hb_000465_390 Hb_000053_020 Hb_000053_020 Hb_001386_040--Hb_000053_020 Hb_000291_080 Hb_000291_080 Hb_002111_040--Hb_000291_080 Hb_005305_110 Hb_005305_110 Hb_002111_040--Hb_005305_110 Hb_000028_350 Hb_000028_350 Hb_002111_040--Hb_000028_350 Hb_002111_040--Hb_031862_100 Hb_001390_130 Hb_001390_130 Hb_002111_040--Hb_001390_130 Hb_006420_100 Hb_006420_100 Hb_002111_040--Hb_006420_100 Hb_003050_220 Hb_003050_220 Hb_001545_080--Hb_003050_220 Hb_155159_030 Hb_155159_030 Hb_001545_080--Hb_155159_030 Hb_001545_080--Hb_127552_030 Hb_005183_120 Hb_005183_120 Hb_001545_080--Hb_005183_120 Hb_001006_190 Hb_001006_190 Hb_001545_080--Hb_001006_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.47581 3.90269 6.01318 9.66971 6.1512 10.5417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1508 15.3987 12.0338 15.624 9.36879

CAGE analysis