Hb_006911_020

Information

Type -
Description -
Location Contig6911: 2868-6192
Sequence    

Annotation

kegg
ID tcc:TCM_045068
description CC-NBS-LRR protein isoform 1
nr
ID XP_007010944.1
description CC-NBS-LRR protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FR37
description CC-NBS-LRR protein isoform 1 OS=Theobroma cacao GN=TCM_045068 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54354: 5350-5898 , PASA_asmbl_54357: 2197-61487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006911_020 0.0 - - CC-NBS-LRR protein isoform 1 [Theobroma cacao]
2 Hb_000320_270 0.1409881983 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
3 Hb_001948_090 0.1461007074 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
4 Hb_001141_060 0.1583284088 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
5 Hb_000836_210 0.1604315659 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
6 Hb_000753_120 0.1623954243 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_071072_010 0.1638372848 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
8 Hb_005725_280 0.1663541207 - - PREDICTED: sodium-coupled neutral amino acid transporter 5-like [Jatropha curcas]
9 Hb_000365_340 0.1672463557 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
10 Hb_004218_080 0.1679604758 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
11 Hb_001102_200 0.1702047915 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
12 Hb_008021_010 0.1715192958 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_000589_420 0.1772121858 - - PREDICTED: uncharacterized protein LOC105647273 [Jatropha curcas]
14 Hb_000556_070 0.1775758879 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
15 Hb_004678_010 0.1779893049 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
16 Hb_003912_080 0.1783782636 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_002849_110 0.1784989143 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
18 Hb_002909_100 0.1789325506 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
19 Hb_000230_470 0.1827302288 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
20 Hb_005408_100 0.1846561626 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_006911_020 Hb_006911_020 Hb_000320_270 Hb_000320_270 Hb_006911_020--Hb_000320_270 Hb_001948_090 Hb_001948_090 Hb_006911_020--Hb_001948_090 Hb_001141_060 Hb_001141_060 Hb_006911_020--Hb_001141_060 Hb_000836_210 Hb_000836_210 Hb_006911_020--Hb_000836_210 Hb_000753_120 Hb_000753_120 Hb_006911_020--Hb_000753_120 Hb_071072_010 Hb_071072_010 Hb_006911_020--Hb_071072_010 Hb_000320_270--Hb_001948_090 Hb_005408_100 Hb_005408_100 Hb_000320_270--Hb_005408_100 Hb_000230_470 Hb_000230_470 Hb_000320_270--Hb_000230_470 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_003912_080 Hb_003912_080 Hb_000320_270--Hb_003912_080 Hb_012308_050 Hb_012308_050 Hb_000320_270--Hb_012308_050 Hb_001948_090--Hb_001141_060 Hb_001948_090--Hb_003912_080 Hb_001948_090--Hb_000230_470 Hb_001948_090--Hb_005408_100 Hb_001948_090--Hb_000753_120 Hb_001141_060--Hb_003912_080 Hb_004678_010 Hb_004678_010 Hb_001141_060--Hb_004678_010 Hb_000035_060 Hb_000035_060 Hb_001141_060--Hb_000035_060 Hb_172676_010 Hb_172676_010 Hb_001141_060--Hb_172676_010 Hb_001141_060--Hb_000320_270 Hb_002849_110 Hb_002849_110 Hb_000836_210--Hb_002849_110 Hb_001472_140 Hb_001472_140 Hb_000836_210--Hb_001472_140 Hb_000087_100 Hb_000087_100 Hb_000836_210--Hb_000087_100 Hb_178658_010 Hb_178658_010 Hb_000836_210--Hb_178658_010 Hb_001541_160 Hb_001541_160 Hb_000836_210--Hb_001541_160 Hb_002311_110 Hb_002311_110 Hb_000836_210--Hb_002311_110 Hb_000753_120--Hb_000230_470 Hb_004013_020 Hb_004013_020 Hb_000753_120--Hb_004013_020 Hb_002909_100 Hb_002909_100 Hb_000753_120--Hb_002909_100 Hb_000753_120--Hb_005408_100 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_000366_050 Hb_000366_050 Hb_071072_010--Hb_000366_050 Hb_005539_100 Hb_005539_100 Hb_071072_010--Hb_005539_100 Hb_032202_050 Hb_032202_050 Hb_071072_010--Hb_032202_050 Hb_011381_070 Hb_011381_070 Hb_071072_010--Hb_011381_070 Hb_002073_020 Hb_002073_020 Hb_071072_010--Hb_002073_020 Hb_000748_110 Hb_000748_110 Hb_071072_010--Hb_000748_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.16838 3.20999 2.00952 2.54639 0.275445 0.557937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0467171 0.34085 0.226204 1.79801

CAGE analysis