Hb_006911_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6911: 20851-38756
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54357: 2197-61487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006911_030 0.0 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_010775_050 0.3401075184 - - -
3 Hb_001709_130 0.3528221582 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_183574_010 0.3626272367 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_001621_160 0.3688611966 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_004195_260 0.3704593908 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
7 Hb_005140_010 0.3710449687 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_119622_010 0.3758028523 - - LRR receptor-like kinase family protein [Medicago truncatula]
9 Hb_003626_080 0.3774438453 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001773_010 0.3816846195 - - -
11 Hb_002506_100 0.3830415823 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
12 Hb_020156_060 0.3850486333 - - PREDICTED: ankyrin-1-like [Prunus mume]
13 Hb_010174_210 0.3853484308 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_006674_020 0.3881364615 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_167973_010 0.3913958674 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
16 Hb_000421_130 0.3917260438 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
17 Hb_000330_080 0.3956196141 - - auxilin, putative [Ricinus communis]
18 Hb_021068_010 0.3957467907 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
19 Hb_001031_050 0.3963040905 - - -
20 Hb_005081_040 0.4004208013 - - -

Gene co-expression network

sample Hb_006911_030 Hb_006911_030 Hb_010775_050 Hb_010775_050 Hb_006911_030--Hb_010775_050 Hb_001709_130 Hb_001709_130 Hb_006911_030--Hb_001709_130 Hb_183574_010 Hb_183574_010 Hb_006911_030--Hb_183574_010 Hb_001621_160 Hb_001621_160 Hb_006911_030--Hb_001621_160 Hb_004195_260 Hb_004195_260 Hb_006911_030--Hb_004195_260 Hb_005140_010 Hb_005140_010 Hb_006911_030--Hb_005140_010 Hb_001773_010 Hb_001773_010 Hb_010775_050--Hb_001773_010 Hb_005451_020 Hb_005451_020 Hb_010775_050--Hb_005451_020 Hb_000078_170 Hb_000078_170 Hb_010775_050--Hb_000078_170 Hb_010775_050--Hb_001709_130 Hb_001965_020 Hb_001965_020 Hb_010775_050--Hb_001965_020 Hb_000330_080 Hb_000330_080 Hb_010775_050--Hb_000330_080 Hb_001709_130--Hb_000078_170 Hb_001709_130--Hb_000330_080 Hb_011639_150 Hb_011639_150 Hb_001709_130--Hb_011639_150 Hb_004884_020 Hb_004884_020 Hb_001709_130--Hb_004884_020 Hb_001009_100 Hb_001009_100 Hb_001709_130--Hb_001009_100 Hb_004361_020 Hb_004361_020 Hb_001709_130--Hb_004361_020 Hb_183574_010--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_183574_010--Hb_021068_010 Hb_183574_010--Hb_004361_020 Hb_005989_010 Hb_005989_010 Hb_183574_010--Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_183574_010--Hb_047661_010 Hb_005241_020 Hb_005241_020 Hb_183574_010--Hb_005241_020 Hb_005054_050 Hb_005054_050 Hb_001621_160--Hb_005054_050 Hb_002374_560 Hb_002374_560 Hb_001621_160--Hb_002374_560 Hb_001504_090 Hb_001504_090 Hb_001621_160--Hb_001504_090 Hb_020156_060 Hb_020156_060 Hb_001621_160--Hb_020156_060 Hb_000421_130 Hb_000421_130 Hb_001621_160--Hb_000421_130 Hb_005565_080 Hb_005565_080 Hb_001621_160--Hb_005565_080 Hb_188319_010 Hb_188319_010 Hb_004195_260--Hb_188319_010 Hb_153142_010 Hb_153142_010 Hb_004195_260--Hb_153142_010 Hb_114010_020 Hb_114010_020 Hb_004195_260--Hb_114010_020 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_004195_260--Hb_005451_020 Hb_006674_020 Hb_006674_020 Hb_004195_260--Hb_006674_020 Hb_005140_010--Hb_114010_020 Hb_005140_010--Hb_188319_010 Hb_005140_010--Hb_153142_010 Hb_000402_140 Hb_000402_140 Hb_005140_010--Hb_000402_140 Hb_068031_010 Hb_068031_010 Hb_005140_010--Hb_068031_010 Hb_005140_010--Hb_004195_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00856681 0.0224684 0.0102379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00551753 0.0149727

CAGE analysis