Hb_006911_070

Information

Type -
Description -
Location Contig6911: 66395-67713
Sequence    

Annotation

kegg
ID rcu:RCOM_0963900
description 50S ribosomal protein L1p, putative
nr
ID XP_002517771.1
description 50S ribosomal protein L1p, putative [Ricinus communis]
swissprot
ID Q9LY66
description 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1
trembl
ID B9RVK2
description Ribosomal protein OS=Ricinus communis GN=RCOM_0963900 PE=3 SV=1
Gene Ontology
ID GO:0003723
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006911_070 0.0 - - 50S ribosomal protein L1p, putative [Ricinus communis]
2 Hb_001907_070 0.0974273051 - - 50S ribosomal protein L1p, putative [Ricinus communis]
3 Hb_000260_710 0.100071894 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
4 Hb_001959_240 0.1041598178 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_031042_060 0.1082900572 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000302_190 0.110223898 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
7 Hb_005618_150 0.1121206922 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
8 Hb_008092_050 0.1153499608 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
9 Hb_001789_160 0.1229549395 - - PREDICTED: putative transporter arsB [Jatropha curcas]
10 Hb_000331_340 0.1244774297 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
11 Hb_005063_080 0.1248263067 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_001408_030 0.1255782043 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
13 Hb_004871_010 0.1281702102 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
14 Hb_002016_010 0.1281830018 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
15 Hb_007594_080 0.1290901068 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
16 Hb_004116_160 0.1307016876 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
17 Hb_000281_070 0.1307154791 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
18 Hb_000363_060 0.1324278941 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
19 Hb_000175_630 0.1328248916 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
20 Hb_002498_170 0.1335112333 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006911_070 Hb_006911_070 Hb_001907_070 Hb_001907_070 Hb_006911_070--Hb_001907_070 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_001959_240 Hb_001959_240 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_005618_150 Hb_005618_150 Hb_006911_070--Hb_005618_150 Hb_001907_070--Hb_005618_150 Hb_005038_030 Hb_005038_030 Hb_001907_070--Hb_005038_030 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_004871_010 Hb_004871_010 Hb_001907_070--Hb_004871_010 Hb_001723_030 Hb_001723_030 Hb_001907_070--Hb_001723_030 Hb_000260_710--Hb_004871_010 Hb_000260_710--Hb_031042_060 Hb_001789_160 Hb_001789_160 Hb_000260_710--Hb_001789_160 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_015531_030 Hb_015531_030 Hb_001959_240--Hb_015531_030 Hb_001959_240--Hb_031042_060 Hb_006618_070 Hb_006618_070 Hb_001959_240--Hb_006618_070 Hb_001454_150 Hb_001454_150 Hb_001959_240--Hb_001454_150 Hb_002498_170 Hb_002498_170 Hb_001959_240--Hb_002498_170 Hb_031042_060--Hb_001789_160 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_001279_090 Hb_001279_090 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_005618_150--Hb_004871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.01031 8.7805 28.8276 12.5558 14.2182 8.80298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3365 3.44321 3.62618 4.16739 33.0006

CAGE analysis