Hb_006913_010

Information

Type -
Description -
Location Contig6913: 21122-22807
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09350g
description hypothetical protein
nr
ID XP_012091097.1
description PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03286 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54361: 21173-22119 , PASA_asmbl_54362: 22143-22940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006913_010 0.0 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
2 Hb_004109_310 0.0643095347 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
3 Hb_000347_440 0.0725249578 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
4 Hb_073973_100 0.0888454638 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
5 Hb_011671_180 0.0908747208 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
6 Hb_007017_030 0.09797628 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
7 Hb_000252_200 0.0996503116 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004920_120 0.1018770196 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002481_080 0.1023296198 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
10 Hb_000023_280 0.1048547258 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
11 Hb_001579_220 0.1053781492 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
12 Hb_010142_030 0.1063586416 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_002197_050 0.1064639783 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
14 Hb_003813_050 0.1065606292 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
15 Hb_002000_080 0.1072593931 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
16 Hb_001018_050 0.1083605848 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
17 Hb_000808_280 0.1086568051 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000645_090 0.1088404452 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003294_070 0.1088501402 - - hypothetical protein RCOM_1714550 [Ricinus communis]
20 Hb_011671_250 0.1098206769 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006913_010 Hb_006913_010 Hb_004109_310 Hb_004109_310 Hb_006913_010--Hb_004109_310 Hb_000347_440 Hb_000347_440 Hb_006913_010--Hb_000347_440 Hb_073973_100 Hb_073973_100 Hb_006913_010--Hb_073973_100 Hb_011671_180 Hb_011671_180 Hb_006913_010--Hb_011671_180 Hb_007017_030 Hb_007017_030 Hb_006913_010--Hb_007017_030 Hb_000252_200 Hb_000252_200 Hb_006913_010--Hb_000252_200 Hb_004109_310--Hb_007017_030 Hb_001571_050 Hb_001571_050 Hb_004109_310--Hb_001571_050 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_000140_480 Hb_000140_480 Hb_000347_440--Hb_000140_480 Hb_000347_440--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_000347_440--Hb_000023_280 Hb_000347_440--Hb_000252_200 Hb_000676_190 Hb_000676_190 Hb_000347_440--Hb_000676_190 Hb_003376_330 Hb_003376_330 Hb_073973_100--Hb_003376_330 Hb_000270_490 Hb_000270_490 Hb_073973_100--Hb_000270_490 Hb_000556_120 Hb_000556_120 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_023732_030 Hb_023732_030 Hb_073973_100--Hb_023732_030 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_000497_110 Hb_000497_110 Hb_011671_180--Hb_000497_110 Hb_011671_180--Hb_002000_080 Hb_001009_170 Hb_001009_170 Hb_011671_180--Hb_001009_170 Hb_004920_120 Hb_004920_120 Hb_011671_180--Hb_004920_120 Hb_011671_180--Hb_000252_200 Hb_000031_120 Hb_000031_120 Hb_011671_180--Hb_000031_120 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_000260_270 Hb_000260_270 Hb_000252_200--Hb_000260_270 Hb_004837_130 Hb_004837_130 Hb_000252_200--Hb_004837_130 Hb_000252_200--Hb_000023_280 Hb_000866_170 Hb_000866_170 Hb_000252_200--Hb_000866_170 Hb_004994_220 Hb_004994_220 Hb_000252_200--Hb_004994_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8189 6.25034 3.78077 12.4035 10.6381 10.0573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8444 13.8355 10.9236 19.2014 6.21011

CAGE analysis