Hb_006913_020

Information

Type -
Description -
Location Contig6913: 23077-30481
Sequence    

Annotation

kegg
ID pop:POPTR_0013s09240g
description POPTRDRAFT_893886; hypothetical protein
nr
ID XP_012091098.1
description PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
swissprot
ID Q400K3
description 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 2 OS=Pseudomonas putida GN=mhpC2 PE=3 SV=1
trembl
ID A0A067JCQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03287 PE=4 SV=1
Gene Ontology
ID GO:0009941
description alpha beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54363: 23069-24919 , PASA_asmbl_54364: 24069-24919 , PASA_asmbl_54365: 23356-23688 , PASA_asmbl_54367: 25920-26019 , PASA_asmbl_54370: 29534-30217 , PASA_asmbl_54371: 30297-30399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006913_020 0.0 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
2 Hb_007413_010 0.0444640334 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
3 Hb_021374_030 0.0544574551 - - hypothetical protein RCOM_0351490 [Ricinus communis]
4 Hb_008948_020 0.0586710598 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
5 Hb_001377_190 0.0599515905 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
6 Hb_001789_110 0.0620687042 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_003098_070 0.0641636835 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
8 Hb_000139_080 0.0659586421 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
9 Hb_000599_270 0.0660200102 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
10 Hb_000169_020 0.0661318274 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
11 Hb_000212_230 0.0692652403 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
12 Hb_003581_200 0.070222654 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
13 Hb_000773_040 0.0716598462 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
14 Hb_000103_340 0.071684029 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
15 Hb_000635_090 0.0721952942 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
16 Hb_073171_070 0.0725272967 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
17 Hb_033312_040 0.0733710042 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
18 Hb_003117_030 0.0745273153 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
19 Hb_005582_040 0.0756856039 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
20 Hb_000363_310 0.0761246836 - - DNA topoisomerase type I, putative [Ricinus communis]

Gene co-expression network

sample Hb_006913_020 Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_006913_020--Hb_007413_010 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_008948_020 Hb_008948_020 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_007413_010--Hb_008948_020 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040 Hb_000189_600 Hb_000189_600 Hb_001377_190--Hb_000189_600 Hb_000363_310 Hb_000363_310 Hb_001377_190--Hb_000363_310 Hb_001377_190--Hb_000749_010 Hb_001377_190--Hb_001925_060 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.15695 4.68192 5.45921 4.94138 2.31243 3.99483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2868 3.93238 3.79082 4.46316 7.1428

CAGE analysis