Hb_006913_030

Information

Type -
Description -
Location Contig6913: 30634-34190
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09370g
description oxidoreductase family protein
nr
ID XP_012091100.1
description PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
swissprot
ID Q5R4S7
description Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1
trembl
ID A0A067JCT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03288 PE=4 SV=1
Gene Ontology
ID GO:0005777
description quinone oxidoreductase-like protein 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54372: 30651-31067 , PASA_asmbl_54374: 33395-33711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006913_030 0.0 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
2 Hb_002107_030 0.0695341611 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
3 Hb_003226_180 0.0738852644 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
4 Hb_002499_040 0.0751999673 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
5 Hb_000365_120 0.0767746393 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
6 Hb_003158_010 0.0823988711 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
7 Hb_002942_190 0.0829062011 - - poly(A) polymerase, putative [Ricinus communis]
8 Hb_005496_130 0.0833041072 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
9 Hb_000329_470 0.0853277674 - - ccr4-not transcription complex, putative [Ricinus communis]
10 Hb_000085_050 0.0858011711 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000403_050 0.08818619 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
12 Hb_003878_070 0.088535783 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
13 Hb_000757_060 0.0886721298 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
14 Hb_006502_090 0.088680238 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
15 Hb_002141_030 0.0893723566 - - conserved hypothetical protein [Ricinus communis]
16 Hb_167498_010 0.0899766038 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
17 Hb_017358_030 0.0902499049 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
18 Hb_002739_100 0.0902946646 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
19 Hb_002888_030 0.0903108051 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_002154_100 0.0911183304 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]

Gene co-expression network

sample Hb_006913_030 Hb_006913_030 Hb_002107_030 Hb_002107_030 Hb_006913_030--Hb_002107_030 Hb_003226_180 Hb_003226_180 Hb_006913_030--Hb_003226_180 Hb_002499_040 Hb_002499_040 Hb_006913_030--Hb_002499_040 Hb_000365_120 Hb_000365_120 Hb_006913_030--Hb_000365_120 Hb_003158_010 Hb_003158_010 Hb_006913_030--Hb_003158_010 Hb_002942_190 Hb_002942_190 Hb_006913_030--Hb_002942_190 Hb_000329_470 Hb_000329_470 Hb_002107_030--Hb_000329_470 Hb_005054_230 Hb_005054_230 Hb_002107_030--Hb_005054_230 Hb_167498_010 Hb_167498_010 Hb_002107_030--Hb_167498_010 Hb_003050_220 Hb_003050_220 Hb_002107_030--Hb_003050_220 Hb_002107_030--Hb_003158_010 Hb_003226_180--Hb_000329_470 Hb_003226_180--Hb_003158_010 Hb_003106_060 Hb_003106_060 Hb_003226_180--Hb_003106_060 Hb_003376_400 Hb_003376_400 Hb_003226_180--Hb_003376_400 Hb_000373_280 Hb_000373_280 Hb_003226_180--Hb_000373_280 Hb_000757_060 Hb_000757_060 Hb_002499_040--Hb_000757_060 Hb_000538_270 Hb_000538_270 Hb_002499_040--Hb_000538_270 Hb_000504_140 Hb_000504_140 Hb_002499_040--Hb_000504_140 Hb_000556_160 Hb_000556_160 Hb_002499_040--Hb_000556_160 Hb_002686_030 Hb_002686_030 Hb_002499_040--Hb_002686_030 Hb_001226_040 Hb_001226_040 Hb_002499_040--Hb_001226_040 Hb_009421_020 Hb_009421_020 Hb_000365_120--Hb_009421_020 Hb_007632_030 Hb_007632_030 Hb_000365_120--Hb_007632_030 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_002141_030 Hb_002141_030 Hb_000365_120--Hb_002141_030 Hb_156973_010 Hb_156973_010 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_003158_010--Hb_000329_470 Hb_003158_010--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_026549_040 Hb_026549_040 Hb_002942_190--Hb_026549_040 Hb_000107_620 Hb_000107_620 Hb_002942_190--Hb_000107_620 Hb_000656_400 Hb_000656_400 Hb_002942_190--Hb_000656_400 Hb_008221_140 Hb_008221_140 Hb_002942_190--Hb_008221_140 Hb_001292_020 Hb_001292_020 Hb_002942_190--Hb_001292_020 Hb_002044_080 Hb_002044_080 Hb_002942_190--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55263 3.414 2.69199 2.21881 4.98096 4.0161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.06979 6.43224 4.57431 4.65983 4.39298

CAGE analysis