Hb_006913_090

Information

Type -
Description -
Location Contig6913: 69611-74319
Sequence    

Annotation

kegg
ID csv:101215996
description uncharacterized LOC101215996
nr
ID XP_004141508.1
description PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0KSP6
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G645130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006913_090 0.0 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
2 Hb_085375_010 0.2151551284 - - protein with unknown function [Ricinus communis]
3 Hb_004635_130 0.222125535 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
4 Hb_097433_010 0.243477313 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
5 Hb_000243_090 0.2437935267 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
6 Hb_002814_120 0.2589134836 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
7 Hb_000205_150 0.2595169244 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
8 Hb_007416_370 0.2601661697 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001433_020 0.2698614976 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
10 Hb_000453_140 0.2709147216 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
11 Hb_003327_030 0.2716854097 - - Hsc70-interacting protein, putative [Ricinus communis]
12 Hb_002473_040 0.2722369522 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
13 Hb_019516_030 0.273043311 - - Calcyclin-binding protein, putative [Ricinus communis]
14 Hb_002518_300 0.2736923685 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
15 Hb_004712_110 0.2740521844 - - 30S ribosomal protein S10, putative [Ricinus communis]
16 Hb_003097_080 0.2809853798 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
17 Hb_000424_160 0.287923229 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
18 Hb_003125_140 0.2886759756 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
19 Hb_000504_080 0.2901099233 - - -
20 Hb_000755_080 0.29078927 - - hypothetical protein RCOM_1016710 [Ricinus communis]

Gene co-expression network

sample Hb_006913_090 Hb_006913_090 Hb_085375_010 Hb_085375_010 Hb_006913_090--Hb_085375_010 Hb_004635_130 Hb_004635_130 Hb_006913_090--Hb_004635_130 Hb_097433_010 Hb_097433_010 Hb_006913_090--Hb_097433_010 Hb_000243_090 Hb_000243_090 Hb_006913_090--Hb_000243_090 Hb_002814_120 Hb_002814_120 Hb_006913_090--Hb_002814_120 Hb_000205_150 Hb_000205_150 Hb_006913_090--Hb_000205_150 Hb_085375_010--Hb_097433_010 Hb_000008_230 Hb_000008_230 Hb_085375_010--Hb_000008_230 Hb_004712_110 Hb_004712_110 Hb_085375_010--Hb_004712_110 Hb_003125_140 Hb_003125_140 Hb_085375_010--Hb_003125_140 Hb_000206_130 Hb_000206_130 Hb_085375_010--Hb_000206_130 Hb_000580_130 Hb_000580_130 Hb_085375_010--Hb_000580_130 Hb_000755_080 Hb_000755_080 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_003327_030 Hb_003327_030 Hb_004635_130--Hb_003327_030 Hb_000787_090 Hb_000787_090 Hb_004635_130--Hb_000787_090 Hb_002896_060 Hb_002896_060 Hb_004635_130--Hb_002896_060 Hb_004635_130--Hb_002814_120 Hb_097433_010--Hb_003327_030 Hb_035947_010 Hb_035947_010 Hb_097433_010--Hb_035947_010 Hb_002918_310 Hb_002918_310 Hb_097433_010--Hb_002918_310 Hb_097433_010--Hb_004635_130 Hb_097433_010--Hb_002814_120 Hb_011639_080 Hb_011639_080 Hb_000243_090--Hb_011639_080 Hb_007416_370 Hb_007416_370 Hb_000243_090--Hb_007416_370 Hb_098315_070 Hb_098315_070 Hb_000243_090--Hb_098315_070 Hb_149838_010 Hb_149838_010 Hb_000243_090--Hb_149838_010 Hb_007456_010 Hb_007456_010 Hb_000243_090--Hb_007456_010 Hb_000265_220 Hb_000265_220 Hb_000243_090--Hb_000265_220 Hb_002814_120--Hb_003327_030 Hb_001009_290 Hb_001009_290 Hb_002814_120--Hb_001009_290 Hb_002814_120--Hb_000755_080 Hb_011512_060 Hb_011512_060 Hb_002814_120--Hb_011512_060 Hb_012132_030 Hb_012132_030 Hb_002814_120--Hb_012132_030 Hb_006452_090 Hb_006452_090 Hb_002814_120--Hb_006452_090 Hb_020156_060 Hb_020156_060 Hb_000205_150--Hb_020156_060 Hb_000205_150--Hb_000243_090 Hb_000613_040 Hb_000613_040 Hb_000205_150--Hb_000613_040 Hb_000205_150--Hb_011639_080 Hb_154114_030 Hb_154114_030 Hb_000205_150--Hb_154114_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248773 0.15971 0.658733 0.0877003 2.26777 0.458477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.195374 0.121044 0.417543 0.336627

CAGE analysis