Hb_006915_030

Information

Type transcription factor
Description TF Family: FAR1
Location Contig6915: 26992-30410
Sequence    

Annotation

kegg
ID cit:102621839
description protein FAR1-RELATED SEQUENCE 8-like
nr
ID XP_012073139.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
swissprot
ID Q9S793
description Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2
trembl
ID A0A067KXP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06111 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54387: 26990-30406 , PASA_asmbl_54388: 29699-29865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_030 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
2 Hb_001198_100 0.062510803 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
3 Hb_002942_100 0.0626011241 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
4 Hb_000571_110 0.0695425962 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
5 Hb_000723_130 0.0697769513 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
6 Hb_009548_020 0.0719836642 - - structural constituent of cell wall, putative [Ricinus communis]
7 Hb_004225_050 0.072148026 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
8 Hb_003168_110 0.0733730423 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
9 Hb_003504_030 0.0734934611 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
10 Hb_004672_040 0.0757926603 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
11 Hb_001799_180 0.0771422849 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
12 Hb_006649_050 0.0793493017 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
13 Hb_002311_040 0.0824987951 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
14 Hb_000009_560 0.082961181 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
15 Hb_000037_190 0.0833806409 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
16 Hb_006017_010 0.0834722991 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
17 Hb_012022_090 0.0841334903 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
18 Hb_002809_050 0.0842634486 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
19 Hb_000003_250 0.0843790162 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_105105_020 0.0857327917 - - vacuolar protein sorting vps41, putative [Ricinus communis]

Gene co-expression network

sample Hb_006915_030 Hb_006915_030 Hb_001198_100 Hb_001198_100 Hb_006915_030--Hb_001198_100 Hb_002942_100 Hb_002942_100 Hb_006915_030--Hb_002942_100 Hb_000571_110 Hb_000571_110 Hb_006915_030--Hb_000571_110 Hb_000723_130 Hb_000723_130 Hb_006915_030--Hb_000723_130 Hb_009548_020 Hb_009548_020 Hb_006915_030--Hb_009548_020 Hb_004225_050 Hb_004225_050 Hb_006915_030--Hb_004225_050 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_002942_100--Hb_001341_170 Hb_000571_110--Hb_000723_130 Hb_028089_010 Hb_028089_010 Hb_000571_110--Hb_028089_010 Hb_000571_110--Hb_009548_020 Hb_000723_200 Hb_000723_200 Hb_000571_110--Hb_000723_200 Hb_000571_110--Hb_012022_090 Hb_000723_130--Hb_002311_040 Hb_000723_130--Hb_009548_020 Hb_000723_130--Hb_002942_100 Hb_000832_020 Hb_000832_020 Hb_000723_130--Hb_000832_020 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_009548_020--Hb_012022_090 Hb_028912_050 Hb_028912_050 Hb_004225_050--Hb_028912_050 Hb_004225_050--Hb_188063_020 Hb_004225_050--Hb_006649_050 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41591 6.75609 4.2597 6.90189 6.28748 8.72353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42389 5.10221 12.8405 6.07505 8.22522

CAGE analysis