Hb_006915_050

Information

Type transcription factor
Description TF Family: FAR1
Location Contig6915: 40153-46116
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20880g
description hypothetical protein
nr
ID XP_012073141.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SIT7
description Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
trembl
ID A0A067KLN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06113 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54393: 42748-44160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_050 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
2 Hb_002016_110 0.0494848228 - - transducin family protein [Populus trichocarpa]
3 Hb_008695_210 0.0567094595 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
4 Hb_000754_040 0.0590682939 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
5 Hb_000111_360 0.0656497527 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000907_080 0.0692377392 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
7 Hb_189003_080 0.0728763447 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
8 Hb_001277_330 0.0749793158 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
9 Hb_000409_020 0.0755676846 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
10 Hb_000567_260 0.0761674772 - - BnaA09g41440D [Brassica napus]
11 Hb_002496_050 0.0805348612 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
12 Hb_001248_130 0.0809571617 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
13 Hb_000614_230 0.0819325705 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
14 Hb_002518_140 0.0819865303 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
15 Hb_002006_090 0.0824320486 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
16 Hb_003142_020 0.083266683 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
17 Hb_005663_060 0.0842318082 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
18 Hb_006922_100 0.0842796774 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
19 Hb_001007_060 0.0843004606 - - Transcriptional corepressor SEUSS [Glycine soja]
20 Hb_000445_420 0.084653728 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_006915_050 Hb_006915_050 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_008695_210 Hb_008695_210 Hb_006915_050--Hb_008695_210 Hb_000754_040 Hb_000754_040 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_006915_050--Hb_189003_080 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_000614_230 Hb_000614_230 Hb_008695_210--Hb_000614_230 Hb_008695_210--Hb_000907_080 Hb_008695_210--Hb_189003_080 Hb_008695_210--Hb_000754_040 Hb_002006_090 Hb_002006_090 Hb_008695_210--Hb_002006_090 Hb_000754_040--Hb_000111_360 Hb_001277_330 Hb_001277_330 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_000754_040--Hb_189003_080 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_000111_360--Hb_002006_090 Hb_000111_360--Hb_001277_330 Hb_000907_080--Hb_189003_080 Hb_000001_140 Hb_000001_140 Hb_000907_080--Hb_000001_140 Hb_000409_020 Hb_000409_020 Hb_000907_080--Hb_000409_020 Hb_000898_040 Hb_000898_040 Hb_000907_080--Hb_000898_040 Hb_000567_260 Hb_000567_260 Hb_189003_080--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52675 3.62126 1.94918 2.73079 5.8453 6.53138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.81865 5.74944 10.3793 4.07447 4.0409

CAGE analysis