Hb_006915_060

Information

Type -
Description -
Location Contig6915: 46642-49944
Sequence    

Annotation

kegg
ID pop:POPTR_0001s20900g
description hypothetical protein
nr
ID XP_012073147.1
description PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
swissprot
ID Q9M2N5
description Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana GN=HAT PE=1 SV=1
trembl
ID U5GWD9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s20900g PE=4 SV=1
Gene Ontology
ID GO:0005737
description zinc finger bed domain-containing protein daysleeper-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_060 0.0 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
2 Hb_003544_100 0.0717656625 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
3 Hb_009411_010 0.0749645851 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
4 Hb_004218_240 0.0751910119 - - PREDICTED: DNA-directed RNA polymerase V subunit 1 [Jatropha curcas]
5 Hb_003847_120 0.077123299 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000010_180 0.0795254411 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
7 Hb_001599_030 0.0802154263 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
8 Hb_015026_050 0.0811976327 - - XPA-binding protein, putative [Ricinus communis]
9 Hb_006449_050 0.0815227696 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
10 Hb_000679_130 0.0816198691 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_000768_190 0.0827221751 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
12 Hb_015884_030 0.0850415701 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
13 Hb_000195_020 0.0866418872 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
14 Hb_000714_050 0.0870839877 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
15 Hb_003406_040 0.0871212962 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_002255_050 0.0873884 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_004096_020 0.0874928763 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
18 Hb_002749_110 0.0879440333 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
19 Hb_002221_050 0.0893184364 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
20 Hb_000025_110 0.0893733596 - - hypothetical protein JCGZ_22722 [Jatropha curcas]

Gene co-expression network

sample Hb_006915_060 Hb_006915_060 Hb_003544_100 Hb_003544_100 Hb_006915_060--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_003847_120 Hb_003847_120 Hb_006915_060--Hb_003847_120 Hb_000010_180 Hb_000010_180 Hb_006915_060--Hb_000010_180 Hb_001599_030 Hb_001599_030 Hb_006915_060--Hb_001599_030 Hb_003544_100--Hb_009411_010 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_000023_190 Hb_000023_190 Hb_004218_240--Hb_000023_190 Hb_003464_020 Hb_003464_020 Hb_004218_240--Hb_003464_020 Hb_010381_060 Hb_010381_060 Hb_004218_240--Hb_010381_060 Hb_009535_020 Hb_009535_020 Hb_004218_240--Hb_009535_020 Hb_000436_040 Hb_000436_040 Hb_004218_240--Hb_000436_040 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_020665_030 Hb_020665_030 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320 Hb_000010_180--Hb_003544_100 Hb_015884_030 Hb_015884_030 Hb_000010_180--Hb_015884_030 Hb_006449_050 Hb_006449_050 Hb_000010_180--Hb_006449_050 Hb_000768_190 Hb_000768_190 Hb_000010_180--Hb_000768_190 Hb_002909_050 Hb_002909_050 Hb_000010_180--Hb_002909_050 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_001599_030--Hb_000320_200 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_001599_030--Hb_009411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.75487 5.57614 4.7268 3.37362 11.0284 13.611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92577 2.69072 6.30058 3.41244 5.68443

CAGE analysis