Hb_006916_040

Information

Type -
Description -
Location Contig6916: 39490-44114
Sequence    

Annotation

kegg
ID rcu:RCOM_0790270
description 60S ribosomal protein L7a, putative
nr
ID XP_002525923.1
description 60S ribosomal protein L7a, putative [Ricinus communis]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID B9SIV4
description 60S ribosomal protein L7a, putative OS=Ricinus communis GN=RCOM_0790270 PE=4 SV=1
Gene Ontology
ID GO:0030529
description e3 ubiquitin-protein ligase at3g02290-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54406: 39506-45484 , PASA_asmbl_54409: 42917-45253
cDNA
(Sanger)
(ID:Location)		 010_N01.ab1: 39506-41766 , 053_B22.ab1: 39506-41800

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_040 0.0 - - 60S ribosomal protein L7a, putative [Ricinus communis]
2 Hb_004631_180 0.0388647305 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
3 Hb_000576_020 0.0591670372 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
4 Hb_000256_190 0.0619038903 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
5 Hb_001051_080 0.0691616236 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
6 Hb_000076_160 0.0697364028 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
7 Hb_033834_030 0.0760002681 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
8 Hb_000120_430 0.076159027 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
9 Hb_002235_210 0.0794634914 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
10 Hb_000979_170 0.079992284 - - clathrin assembly protein, putative [Ricinus communis]
11 Hb_000282_030 0.0845281788 - - K(+) efflux antiporter 4 [Glycine soja]
12 Hb_003549_150 0.0846461191 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
13 Hb_003124_220 0.0860535502 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
14 Hb_000928_220 0.0887227992 - - PREDICTED: protein SCAI [Jatropha curcas]
15 Hb_005355_030 0.0893789722 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
16 Hb_001143_180 0.0905256374 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
17 Hb_000107_190 0.0912367946 - - 50S ribosomal protein L20 [Hevea brasiliensis]
18 Hb_007416_300 0.0915758051 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
19 Hb_000959_270 0.0916063075 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
20 Hb_006588_070 0.0917678192 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006916_040 Hb_006916_040 Hb_004631_180 Hb_004631_180 Hb_006916_040--Hb_004631_180 Hb_000576_020 Hb_000576_020 Hb_006916_040--Hb_000576_020 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_004631_180--Hb_000576_020 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210 Hb_000576_020--Hb_000076_160 Hb_002311_070 Hb_002311_070 Hb_000576_020--Hb_002311_070 Hb_000928_220 Hb_000928_220 Hb_000576_020--Hb_000928_220 Hb_001077_030 Hb_001077_030 Hb_000576_020--Hb_001077_030 Hb_001347_040 Hb_001347_040 Hb_000256_190--Hb_001347_040 Hb_112798_020 Hb_112798_020 Hb_000256_190--Hb_112798_020 Hb_003124_220 Hb_003124_220 Hb_000256_190--Hb_003124_220 Hb_003549_150 Hb_003549_150 Hb_000256_190--Hb_003549_150 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_001051_080--Hb_000120_430 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_001051_080--Hb_003549_150 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3189 22.9681 19.811 21.3428 24.8147 22.0489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6032 19.2913 9.49121 13.567 5.45795

CAGE analysis