Hb_006916_050

Information

Type -
Description -
Location Contig6916: 51454-57315
Sequence    

Annotation

kegg
ID rcu:RCOM_0790230
description Protein pim1, putative
nr
ID XP_012088067.1
description PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q6P798
description RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1
trembl
ID A0A067JWD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25596 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54410: 51194-52516 , PASA_asmbl_54411: 51012-54304 , PASA_asmbl_54412: 52188-52575 , PASA_asmbl_54415: 53889-57045 , PASA_asmbl_54416: 51955-52158 , PASA_asmbl_54417: 55438-55845
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_050 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_002249_080 0.0754069966 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
3 Hb_068079_010 0.0772671143 - - -
4 Hb_000376_210 0.08271286 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
5 Hb_000617_250 0.085678821 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
6 Hb_002828_060 0.0886418249 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
7 Hb_004705_160 0.0899352361 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
8 Hb_000862_100 0.0942570301 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
9 Hb_005571_010 0.0953736045 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
10 Hb_000107_250 0.095846874 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
11 Hb_010620_050 0.0974038474 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
12 Hb_000510_190 0.0978187123 - - glutathione reductase [Hevea brasiliensis]
13 Hb_000482_050 0.1010528947 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
14 Hb_001579_200 0.1011401877 - - nucleoredoxin, putative [Ricinus communis]
15 Hb_004629_030 0.1011425231 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_025194_050 0.1021128926 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
17 Hb_003355_010 0.103591997 - - Heat shock 70 kDa protein, putative [Ricinus communis]
18 Hb_124379_010 0.1051108425 - - PREDICTED: notchless protein homolog [Citrus sinensis]
19 Hb_001105_040 0.10690085 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_068804_090 0.1070509693 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]

Gene co-expression network

sample Hb_006916_050 Hb_006916_050 Hb_002249_080 Hb_002249_080 Hb_006916_050--Hb_002249_080 Hb_068079_010 Hb_068079_010 Hb_006916_050--Hb_068079_010 Hb_000376_210 Hb_000376_210 Hb_006916_050--Hb_000376_210 Hb_000617_250 Hb_000617_250 Hb_006916_050--Hb_000617_250 Hb_002828_060 Hb_002828_060 Hb_006916_050--Hb_002828_060 Hb_004705_160 Hb_004705_160 Hb_006916_050--Hb_004705_160 Hb_000585_110 Hb_000585_110 Hb_002249_080--Hb_000585_110 Hb_000007_090 Hb_000007_090 Hb_002249_080--Hb_000007_090 Hb_015884_020 Hb_015884_020 Hb_002249_080--Hb_015884_020 Hb_002249_080--Hb_002828_060 Hb_000510_190 Hb_000510_190 Hb_002249_080--Hb_000510_190 Hb_068079_010--Hb_002828_060 Hb_000108_020 Hb_000108_020 Hb_068079_010--Hb_000108_020 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_068079_010--Hb_004705_160 Hb_000376_210--Hb_000617_250 Hb_021079_020 Hb_021079_020 Hb_000376_210--Hb_021079_020 Hb_004629_030 Hb_004629_030 Hb_000376_210--Hb_004629_030 Hb_000762_110 Hb_000762_110 Hb_000376_210--Hb_000762_110 Hb_068804_090 Hb_068804_090 Hb_000376_210--Hb_068804_090 Hb_007012_030 Hb_007012_030 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_000617_250--Hb_068804_090 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_002828_060--Hb_000482_050 Hb_002828_060--Hb_000510_190 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_004705_160--Hb_000862_100 Hb_138585_030 Hb_138585_030 Hb_004705_160--Hb_138585_030 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_000748_090 Hb_000748_090 Hb_004705_160--Hb_000748_090 Hb_000788_030 Hb_000788_030 Hb_004705_160--Hb_000788_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04785 7.84725 13.9336 13.7047 6.34841 3.4945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.06909 5.23374 2.53991 7.44156 22.3175

CAGE analysis