Hb_006916_060

Information

Type transcription factor
Description TF Family: MIKC
Location Contig6916: 57654-68443
Sequence    

Annotation

kegg
ID tcc:TCM_018981
description Agamous-like MADS-box protein AGL8 isoform 1
nr
ID XP_012088065.1
description PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
swissprot
ID Q42429
description Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A061EHA9
description Agamous-like MADS-box protein AGL8 isoform 1 OS=Theobroma cacao GN=TCM_018981 PE=4 SV=1
Gene Ontology
ID GO:0005634
description truncated transcription factor cauliflower a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54418: 57662-68158 , PASA_asmbl_54419: 67016-67310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_060 0.0 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
2 Hb_001366_350 0.1791101624 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
3 Hb_005488_160 0.2067640376 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_015175_040 0.2112330832 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001519_170 0.2124960419 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
6 Hb_023732_050 0.2173712468 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_005271_100 0.219119155 - - unnamed protein product [Vitis vinifera]
8 Hb_001711_060 0.2240519538 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
9 Hb_003638_040 0.226450518 - - kinesin heavy chain, putative [Ricinus communis]
10 Hb_000977_100 0.2286003688 - - PREDICTED: LOW QUALITY PROTEIN: acetolactate synthase small subunit 1, chloroplastic [Jatropha curcas]
11 Hb_003786_080 0.2294724462 - - electron transporter, putative [Ricinus communis]
12 Hb_000028_150 0.2298586986 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
13 Hb_000974_040 0.233345941 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
14 Hb_000431_150 0.2335655031 - - ribosomal protein L27, putative [Ricinus communis]
15 Hb_177281_010 0.2343624194 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
16 Hb_140360_010 0.2351996365 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
17 Hb_004459_060 0.2370233897 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
18 Hb_004007_170 0.2372500828 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_001386_090 0.2384644602 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
20 Hb_000000_180 0.2398717218 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_006916_060 Hb_006916_060 Hb_001366_350 Hb_001366_350 Hb_006916_060--Hb_001366_350 Hb_005488_160 Hb_005488_160 Hb_006916_060--Hb_005488_160 Hb_015175_040 Hb_015175_040 Hb_006916_060--Hb_015175_040 Hb_001519_170 Hb_001519_170 Hb_006916_060--Hb_001519_170 Hb_023732_050 Hb_023732_050 Hb_006916_060--Hb_023732_050 Hb_005271_100 Hb_005271_100 Hb_006916_060--Hb_005271_100 Hb_001366_350--Hb_001519_170 Hb_000146_030 Hb_000146_030 Hb_001366_350--Hb_000146_030 Hb_001711_060 Hb_001711_060 Hb_001366_350--Hb_001711_060 Hb_004007_170 Hb_004007_170 Hb_001366_350--Hb_004007_170 Hb_001366_350--Hb_005488_160 Hb_011114_020 Hb_011114_020 Hb_001366_350--Hb_011114_020 Hb_005563_040 Hb_005563_040 Hb_005488_160--Hb_005563_040 Hb_002411_100 Hb_002411_100 Hb_005488_160--Hb_002411_100 Hb_007694_060 Hb_007694_060 Hb_005488_160--Hb_007694_060 Hb_005488_160--Hb_015175_040 Hb_010557_010 Hb_010557_010 Hb_005488_160--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_005488_160--Hb_000703_070 Hb_006583_030 Hb_006583_030 Hb_015175_040--Hb_006583_030 Hb_015175_040--Hb_010557_010 Hb_000442_070 Hb_000442_070 Hb_015175_040--Hb_000442_070 Hb_015175_040--Hb_002411_100 Hb_000302_230 Hb_000302_230 Hb_015175_040--Hb_000302_230 Hb_001519_170--Hb_001711_060 Hb_140360_010 Hb_140360_010 Hb_001519_170--Hb_140360_010 Hb_001519_170--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_001519_170--Hb_000000_180 Hb_001386_090 Hb_001386_090 Hb_001519_170--Hb_001386_090 Hb_023732_050--Hb_007694_060 Hb_023732_050--Hb_011114_020 Hb_006620_070 Hb_006620_070 Hb_023732_050--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_023732_050--Hb_004459_060 Hb_003038_100 Hb_003038_100 Hb_023732_050--Hb_003038_100 Hb_001405_090 Hb_001405_090 Hb_023732_050--Hb_001405_090 Hb_000977_100 Hb_000977_100 Hb_005271_100--Hb_000977_100 Hb_005779_020 Hb_005779_020 Hb_005271_100--Hb_005779_020 Hb_005237_020 Hb_005237_020 Hb_005271_100--Hb_005237_020 Hb_000958_060 Hb_000958_060 Hb_005271_100--Hb_000958_060 Hb_177281_010 Hb_177281_010 Hb_005271_100--Hb_177281_010 Hb_000961_060 Hb_000961_060 Hb_005271_100--Hb_000961_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19641 0.440434 66.7236 3.91183 2.66478 0.889545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41931 6.73934 7.81525 0.395389 32.2903

CAGE analysis