Hb_006916_070

Information

Type transcription factor
Description TF Family: MIKC
Location Contig6916: 73975-81375
Sequence    

Annotation

kegg
ID cit:102615242
description developmental protein SEPALLATA 1-like
nr
ID XP_012088064.1
description PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
swissprot
ID P29384
description Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1
trembl
ID A0A067JK97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25593 PE=4 SV=1
Gene Ontology
ID GO:0005634
description developmental protein sepallata 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54420: 74442-76152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_070 0.0 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
2 Hb_000995_020 0.1687063316 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000920_120 0.176803897 - - -
4 Hb_004757_050 0.1795014178 - - -
5 Hb_000637_100 0.1839730393 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
6 Hb_004617_010 0.1882699264 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
7 Hb_017914_020 0.192599502 - - -
8 Hb_003952_080 0.1963611219 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000580_210 0.1972617218 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
10 Hb_000307_060 0.1985871686 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
11 Hb_007311_050 0.1987120814 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001810_040 0.198898401 - - -
13 Hb_000087_160 0.2031792804 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_003020_200 0.2040877968 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
15 Hb_005914_130 0.204092621 - - -
16 Hb_001141_430 0.2053483288 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
17 Hb_000617_300 0.2065504951 - - RALFL33, putative [Ricinus communis]
18 Hb_021596_050 0.207097532 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005588_050 0.2089331773 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000025_150 0.2089821464 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]

Gene co-expression network

sample Hb_006916_070 Hb_006916_070 Hb_000995_020 Hb_000995_020 Hb_006916_070--Hb_000995_020 Hb_000920_120 Hb_000920_120 Hb_006916_070--Hb_000920_120 Hb_004757_050 Hb_004757_050 Hb_006916_070--Hb_004757_050 Hb_000637_100 Hb_000637_100 Hb_006916_070--Hb_000637_100 Hb_004617_010 Hb_004617_010 Hb_006916_070--Hb_004617_010 Hb_017914_020 Hb_017914_020 Hb_006916_070--Hb_017914_020 Hb_102772_010 Hb_102772_010 Hb_000995_020--Hb_102772_010 Hb_000622_230 Hb_000622_230 Hb_000995_020--Hb_000622_230 Hb_000622_120 Hb_000622_120 Hb_000995_020--Hb_000622_120 Hb_006816_060 Hb_006816_060 Hb_000995_020--Hb_006816_060 Hb_003371_030 Hb_003371_030 Hb_000995_020--Hb_003371_030 Hb_000617_300 Hb_000617_300 Hb_000995_020--Hb_000617_300 Hb_000087_160 Hb_000087_160 Hb_000920_120--Hb_000087_160 Hb_012217_010 Hb_012217_010 Hb_000920_120--Hb_012217_010 Hb_002030_190 Hb_002030_190 Hb_000920_120--Hb_002030_190 Hb_007441_100 Hb_007441_100 Hb_000920_120--Hb_007441_100 Hb_001500_020 Hb_001500_020 Hb_000920_120--Hb_001500_020 Hb_000188_140 Hb_000188_140 Hb_000920_120--Hb_000188_140 Hb_000307_060 Hb_000307_060 Hb_004757_050--Hb_000307_060 Hb_000599_160 Hb_000599_160 Hb_004757_050--Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_004757_050--Hb_000317_170 Hb_007741_140 Hb_007741_140 Hb_004757_050--Hb_007741_140 Hb_002081_160 Hb_002081_160 Hb_004757_050--Hb_002081_160 Hb_002759_030 Hb_002759_030 Hb_000637_100--Hb_002759_030 Hb_000622_190 Hb_000622_190 Hb_000637_100--Hb_000622_190 Hb_021596_050 Hb_021596_050 Hb_000637_100--Hb_021596_050 Hb_004586_440 Hb_004586_440 Hb_000637_100--Hb_004586_440 Hb_000030_130 Hb_000030_130 Hb_000637_100--Hb_000030_130 Hb_000637_100--Hb_000599_160 Hb_002837_150 Hb_002837_150 Hb_004617_010--Hb_002837_150 Hb_011344_050 Hb_011344_050 Hb_004617_010--Hb_011344_050 Hb_159791_010 Hb_159791_010 Hb_004617_010--Hb_159791_010 Hb_004757_010 Hb_004757_010 Hb_004617_010--Hb_004757_010 Hb_001141_430 Hb_001141_430 Hb_004617_010--Hb_001141_430 Hb_145975_010 Hb_145975_010 Hb_004617_010--Hb_145975_010 Hb_031330_010 Hb_031330_010 Hb_017914_020--Hb_031330_010 Hb_000521_060 Hb_000521_060 Hb_017914_020--Hb_000521_060 Hb_000362_030 Hb_000362_030 Hb_017914_020--Hb_000362_030 Hb_071079_040 Hb_071079_040 Hb_017914_020--Hb_071079_040 Hb_000645_230 Hb_000645_230 Hb_017914_020--Hb_000645_230 Hb_000645_080 Hb_000645_080 Hb_017914_020--Hb_000645_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0339771 0.544 0.210109 5.19271 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313642 0.123288 0.110272 0.050114 0.611264

CAGE analysis