Hb_006916_120

Information

Type -
Description -
Location Contig6916: 130054-132439
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11700g
description POPTRDRAFT_712863; type IIIa membrane protein cp-wap13
nr
ID XP_012088058.1
description PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
swissprot
ID Q9SRT9
description UDP-arabinopyranose mutase 1 OS=Arabidopsis thaliana GN=RGP1 PE=1 SV=1
trembl
ID A0A067JK93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25588 PE=4 SV=1
Gene Ontology
ID GO:0016866
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_120 0.0 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
2 Hb_133508_020 0.0676470228 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
3 Hb_000975_090 0.0723206142 - - Zeamatin precursor, putative [Ricinus communis]
4 Hb_000152_590 0.0967797636 - - PREDICTED: 21 kDa protein [Jatropha curcas]
5 Hb_000631_100 0.0992008317 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
6 Hb_006351_030 0.1115543291 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
7 Hb_087427_010 0.1141821814 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
8 Hb_001247_090 0.1176348193 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
9 Hb_189208_050 0.1208891613 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
10 Hb_010672_010 0.1214057124 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
11 Hb_008725_100 0.1216205217 - - PREDICTED: histone H1-like [Jatropha curcas]
12 Hb_146901_020 0.1248367165 - - -
13 Hb_003875_040 0.1293750556 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
14 Hb_024868_010 0.1299530708 - - protein kinase, putative [Ricinus communis]
15 Hb_000098_270 0.131067055 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
16 Hb_000411_020 0.1319198498 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001025_100 0.1345342323 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
18 Hb_003216_140 0.1346858598 - - F-box protein SNE, putative [Ricinus communis]
19 Hb_000111_120 0.1369962551 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_003055_080 0.1382436786 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006916_120 Hb_006916_120 Hb_133508_020 Hb_133508_020 Hb_006916_120--Hb_133508_020 Hb_000975_090 Hb_000975_090 Hb_006916_120--Hb_000975_090 Hb_000152_590 Hb_000152_590 Hb_006916_120--Hb_000152_590 Hb_000631_100 Hb_000631_100 Hb_006916_120--Hb_000631_100 Hb_006351_030 Hb_006351_030 Hb_006916_120--Hb_006351_030 Hb_087427_010 Hb_087427_010 Hb_006916_120--Hb_087427_010 Hb_133508_020--Hb_000152_590 Hb_133508_020--Hb_000975_090 Hb_185830_090 Hb_185830_090 Hb_133508_020--Hb_185830_090 Hb_010672_010 Hb_010672_010 Hb_133508_020--Hb_010672_010 Hb_096878_010 Hb_096878_010 Hb_133508_020--Hb_096878_010 Hb_170632_010 Hb_170632_010 Hb_000975_090--Hb_170632_010 Hb_000060_080 Hb_000060_080 Hb_000975_090--Hb_000060_080 Hb_000975_090--Hb_000631_100 Hb_001562_030 Hb_001562_030 Hb_000975_090--Hb_001562_030 Hb_000152_590--Hb_010672_010 Hb_001782_100 Hb_001782_100 Hb_000152_590--Hb_001782_100 Hb_000152_590--Hb_006351_030 Hb_146901_020 Hb_146901_020 Hb_000152_590--Hb_146901_020 Hb_000411_020 Hb_000411_020 Hb_000631_100--Hb_000411_020 Hb_189208_050 Hb_189208_050 Hb_000631_100--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_000631_100--Hb_024868_010 Hb_000631_100--Hb_087427_010 Hb_002641_140 Hb_002641_140 Hb_000631_100--Hb_002641_140 Hb_008021_040 Hb_008021_040 Hb_000631_100--Hb_008021_040 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_006351_030--Hb_001782_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_033053_020 Hb_033053_020 Hb_087427_010--Hb_033053_020 Hb_087427_010--Hb_189208_050 Hb_087427_010--Hb_008021_040 Hb_087427_010--Hb_024868_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153877 4.37121 10.7106 16.5563 0.0517983 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0632594 0 4.73812 0.982298

CAGE analysis