Hb_006916_180

Information

Type -
Description -
Location Contig6916: 170265-174980
Sequence    

Annotation

kegg
ID rcu:RCOM_0917530
description Mitochondrial carnitine/acylcarnitine carrier protein, putative
nr
ID XP_002530999.1
description Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
swissprot
ID Q8BGF9
description Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1
trembl
ID B9SYD0
description Mitochondrial carnitine/acylcarnitine carrier protein, putative OS=Ricinus communis GN=RCOM_0917530 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54431: 171748-172246 , PASA_asmbl_54433: 174779-175137
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_180 0.0 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
2 Hb_002000_120 0.1781454805 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_023547_020 0.1880267273 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005436_030 0.192084568 - - PREDICTED: UDP-glycosyltransferase 74E1-like [Jatropha curcas]
5 Hb_001210_100 0.1957272545 - - Gibberellin 20 oxidase, putative [Ricinus communis]
6 Hb_003645_050 0.2076015126 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001534_040 0.2150100058 - - hypothetical protein JCGZ_08436 [Jatropha curcas]
8 Hb_000856_130 0.2207264207 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_064106_010 0.2240828268 - - PREDICTED: uncharacterized protein LOC104878249 [Vitis vinifera]
10 Hb_006992_030 0.2242907514 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
11 Hb_004864_010 0.2286665379 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
12 Hb_001538_040 0.2294658365 - - PREDICTED: uncharacterized protein LOC104228304 [Nicotiana sylvestris]
13 Hb_021443_050 0.2344450408 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000094_050 0.2345639162 - - -
15 Hb_000375_250 0.2353669839 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
16 Hb_005743_030 0.2390030576 - - hypothetical protein, partial [Pseudomonas fluorescens]
17 Hb_003494_180 0.2400730841 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
18 Hb_089568_010 0.2437601377 - - ferric reductase oxidase [Manihot esculenta]
19 Hb_060822_010 0.2457155215 - - -
20 Hb_002845_020 0.2458611721 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]

Gene co-expression network

sample Hb_006916_180 Hb_006916_180 Hb_002000_120 Hb_002000_120 Hb_006916_180--Hb_002000_120 Hb_023547_020 Hb_023547_020 Hb_006916_180--Hb_023547_020 Hb_005436_030 Hb_005436_030 Hb_006916_180--Hb_005436_030 Hb_001210_100 Hb_001210_100 Hb_006916_180--Hb_001210_100 Hb_003645_050 Hb_003645_050 Hb_006916_180--Hb_003645_050 Hb_001534_040 Hb_001534_040 Hb_006916_180--Hb_001534_040 Hb_000094_050 Hb_000094_050 Hb_002000_120--Hb_000094_050 Hb_002000_120--Hb_003645_050 Hb_010691_010 Hb_010691_010 Hb_002000_120--Hb_010691_010 Hb_002000_120--Hb_001210_100 Hb_002217_290 Hb_002217_290 Hb_002000_120--Hb_002217_290 Hb_023547_020--Hb_005436_030 Hb_001538_040 Hb_001538_040 Hb_023547_020--Hb_001538_040 Hb_060822_010 Hb_060822_010 Hb_023547_020--Hb_060822_010 Hb_064106_010 Hb_064106_010 Hb_023547_020--Hb_064106_010 Hb_006992_030 Hb_006992_030 Hb_023547_020--Hb_006992_030 Hb_005831_010 Hb_005831_010 Hb_023547_020--Hb_005831_010 Hb_005436_030--Hb_001538_040 Hb_005436_030--Hb_060822_010 Hb_005436_030--Hb_064106_010 Hb_003494_180 Hb_003494_180 Hb_005436_030--Hb_003494_180 Hb_005436_030--Hb_006992_030 Hb_001210_100--Hb_001534_040 Hb_003935_010 Hb_003935_010 Hb_001210_100--Hb_003935_010 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_001210_100--Hb_005436_030 Hb_000060_070 Hb_000060_070 Hb_003645_050--Hb_000060_070 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_003645_050--Hb_000094_050 Hb_001534_040--Hb_060822_010 Hb_001534_040--Hb_005436_030 Hb_089299_010 Hb_089299_010 Hb_001534_040--Hb_089299_010 Hb_142051_010 Hb_142051_010 Hb_001534_040--Hb_142051_010 Hb_006810_010 Hb_006810_010 Hb_001534_040--Hb_006810_010 Hb_002809_090 Hb_002809_090 Hb_001534_040--Hb_002809_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0995187 0.163095 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.053687 0 0.195634 0.323024

CAGE analysis