Hb_006921_040

Information

Type -
Description -
Location Contig6921: 58705-60538
Sequence    

Annotation

kegg
ID rcu:RCOM_0803060
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077451.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
swissprot
ID Q8GZ63
description Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
trembl
ID A0A067KR04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07785 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006921_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
2 Hb_000544_160 0.2145527261 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
3 Hb_000107_470 0.2568563225 - - cellulose synthase, putative [Ricinus communis]
4 Hb_001366_120 0.2818255795 - - unknown [Zea mays]
5 Hb_002102_020 0.2950015899 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
6 Hb_010174_080 0.2961481561 - - -
7 Hb_000181_410 0.2988186725 - - conserved hypothetical protein [Ricinus communis]
8 Hb_022174_010 0.3002909191 - - elicitor-responsive protein [Hevea brasiliensis]
9 Hb_002722_010 0.3008927897 - - Disease resistance response protein, putative [Ricinus communis]
10 Hb_078897_010 0.3013329838 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
11 Hb_000011_410 0.3017582571 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010712_070 0.3020458672 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
13 Hb_000684_240 0.306250245 - - hypothetical protein RCOM_0819620 [Ricinus communis]
14 Hb_000069_710 0.3099363424 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
15 Hb_004453_100 0.3132878305 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013399_080 0.3155877732 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
17 Hb_000069_170 0.319905686 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
18 Hb_024836_010 0.3210719785 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
19 Hb_000326_040 0.3247855378 - - hypothetical protein PHAVU_006G187900g [Phaseolus vulgaris]
20 Hb_002518_060 0.3281743756 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]

Gene co-expression network

sample Hb_006921_040 Hb_006921_040 Hb_000544_160 Hb_000544_160 Hb_006921_040--Hb_000544_160 Hb_000107_470 Hb_000107_470 Hb_006921_040--Hb_000107_470 Hb_001366_120 Hb_001366_120 Hb_006921_040--Hb_001366_120 Hb_002102_020 Hb_002102_020 Hb_006921_040--Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_006921_040--Hb_010174_080 Hb_000181_410 Hb_000181_410 Hb_006921_040--Hb_000181_410 Hb_078897_010 Hb_078897_010 Hb_000544_160--Hb_078897_010 Hb_010712_070 Hb_010712_070 Hb_000544_160--Hb_010712_070 Hb_002722_010 Hb_002722_010 Hb_000544_160--Hb_002722_010 Hb_000544_160--Hb_000107_470 Hb_000544_160--Hb_001366_120 Hb_000107_470--Hb_000181_410 Hb_004994_130 Hb_004994_130 Hb_000107_470--Hb_004994_130 Hb_004453_100 Hb_004453_100 Hb_000107_470--Hb_004453_100 Hb_007603_020 Hb_007603_020 Hb_000107_470--Hb_007603_020 Hb_004899_060 Hb_004899_060 Hb_001366_120--Hb_004899_060 Hb_005976_050 Hb_005976_050 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_001606_080 Hb_001606_080 Hb_001366_120--Hb_001606_080 Hb_001366_120--Hb_078897_010 Hb_031862_130 Hb_031862_130 Hb_001366_120--Hb_031862_130 Hb_002102_020--Hb_010174_080 Hb_000856_190 Hb_000856_190 Hb_002102_020--Hb_000856_190 Hb_000818_010 Hb_000818_010 Hb_002102_020--Hb_000818_010 Hb_000025_030 Hb_000025_030 Hb_002102_020--Hb_000025_030 Hb_000019_150 Hb_000019_150 Hb_002102_020--Hb_000019_150 Hb_000479_150 Hb_000479_150 Hb_002102_020--Hb_000479_150 Hb_000326_040 Hb_000326_040 Hb_010174_080--Hb_000326_040 Hb_004800_250 Hb_004800_250 Hb_010174_080--Hb_004800_250 Hb_004586_210 Hb_004586_210 Hb_010174_080--Hb_004586_210 Hb_010174_080--Hb_000856_190 Hb_000215_080 Hb_000215_080 Hb_010174_080--Hb_000215_080 Hb_000181_410--Hb_007603_020 Hb_000181_410--Hb_004994_130 Hb_000904_130 Hb_000904_130 Hb_000181_410--Hb_000904_130 Hb_000152_510 Hb_000152_510 Hb_000181_410--Hb_000152_510 Hb_163839_010 Hb_163839_010 Hb_000181_410--Hb_163839_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.401142 0.0519523 0.282739 0.265075 0.0810374 0.0832838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0508728 0.36915 0.0205692 0

CAGE analysis