Hb_006922_010

Information

Type -
Description -
Location Contig6922: 18092-22021
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02160g
description POPTRDRAFT_569545; hypothetical protein
nr
ID XP_012087720.1
description PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
swissprot
ID Q9LUU3
description Putative F-box/kelch-repeat protein At3g17280 OS=Arabidopsis thaliana GN=At3g17280 PE=3 SV=1
trembl
ID A0A067JYS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26452 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 018_D08.ab1: 18077-18739

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_010 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
2 Hb_033772_030 0.0528299933 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
3 Hb_005000_260 0.0535881513 - - recA family protein [Populus trichocarpa]
4 Hb_002900_090 0.0543734958 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
5 Hb_003370_030 0.0647663413 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
6 Hb_007163_120 0.0685370534 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
7 Hb_000739_100 0.072017169 - - ku P80 DNA helicase, putative [Ricinus communis]
8 Hb_003464_090 0.0773040978 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
9 Hb_009627_030 0.0774651848 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
10 Hb_000083_120 0.0795509348 - - transcription factor, putative [Ricinus communis]
11 Hb_010381_030 0.0804401313 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
12 Hb_000649_110 0.0805175923 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
13 Hb_003866_080 0.0809811773 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
14 Hb_005207_050 0.0823656479 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
15 Hb_024621_040 0.0824705993 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
16 Hb_003906_200 0.083247051 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
17 Hb_000107_660 0.0834566732 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
18 Hb_001408_040 0.0840478578 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
19 Hb_000173_490 0.0843736287 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
20 Hb_007765_110 0.0844854238 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_006922_010 Hb_006922_010 Hb_033772_030 Hb_033772_030 Hb_006922_010--Hb_033772_030 Hb_005000_260 Hb_005000_260 Hb_006922_010--Hb_005000_260 Hb_002900_090 Hb_002900_090 Hb_006922_010--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_006922_010--Hb_003370_030 Hb_007163_120 Hb_007163_120 Hb_006922_010--Hb_007163_120 Hb_000739_100 Hb_000739_100 Hb_006922_010--Hb_000739_100 Hb_033772_030--Hb_007163_120 Hb_033772_030--Hb_002900_090 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_003464_090 Hb_003464_090 Hb_033772_030--Hb_003464_090 Hb_005000_260--Hb_003370_030 Hb_005000_260--Hb_002900_090 Hb_005000_260--Hb_000739_100 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_005000_260--Hb_007163_120 Hb_002900_090--Hb_000739_100 Hb_002900_090--Hb_003464_090 Hb_002900_090--Hb_007163_120 Hb_003370_030--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003370_030--Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17659 8.43031 4.05441 5.19034 3.83436 5.70397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86046 5.12526 5.12885 6.71337 2.87446

CAGE analysis