Hb_006922_030

Information

Type -
Description -
Location Contig6922: 63153-67323
Sequence    

Annotation

kegg
ID rcu:RCOM_1243450
description ubiquitin, putative
nr
ID XP_002516697.1
description ubiquitin, putative [Ricinus communis]
swissprot
ID Q9FNF8
description Phosphatidylinositol 4-kinase gamma 3 OS=Arabidopsis thaliana GN=PI4KG3 PE=2 SV=1
trembl
ID B9RSH8
description Ubiquitin, putative OS=Ricinus communis GN=RCOM_1243450 PE=4 SV=1
Gene Ontology
ID GO:0005777
description phosphatidylinositol 4-kinase gamma 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54475: 63304-67309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_030 0.0 - - ubiquitin, putative [Ricinus communis]
2 Hb_001085_170 0.0638394311 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
3 Hb_002006_090 0.082950835 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
4 Hb_007416_270 0.0998437849 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
5 Hb_000001_140 0.1016017342 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
6 Hb_008695_210 0.102814766 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
7 Hb_000614_230 0.1032970015 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
8 Hb_005625_020 0.1044278063 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_003687_100 0.1048629397 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
10 Hb_000427_050 0.1063858801 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000907_080 0.1091437256 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
12 Hb_001329_300 0.1097061408 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
13 Hb_000236_140 0.1099741194 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
14 Hb_029584_130 0.1102670044 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
15 Hb_000898_040 0.1117771966 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_000007_150 0.1150293529 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
17 Hb_003976_030 0.1166817322 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
18 Hb_000069_460 0.1180694499 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
19 Hb_000207_250 0.1193035177 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
20 Hb_002678_020 0.1201024928 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]

Gene co-expression network

sample Hb_006922_030 Hb_006922_030 Hb_001085_170 Hb_001085_170 Hb_006922_030--Hb_001085_170 Hb_002006_090 Hb_002006_090 Hb_006922_030--Hb_002006_090 Hb_007416_270 Hb_007416_270 Hb_006922_030--Hb_007416_270 Hb_000001_140 Hb_000001_140 Hb_006922_030--Hb_000001_140 Hb_008695_210 Hb_008695_210 Hb_006922_030--Hb_008695_210 Hb_000614_230 Hb_000614_230 Hb_006922_030--Hb_000614_230 Hb_007558_140 Hb_007558_140 Hb_001085_170--Hb_007558_140 Hb_001085_170--Hb_002006_090 Hb_001085_170--Hb_000614_230 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080 Hb_000179_210 Hb_000179_210 Hb_001085_170--Hb_000179_210 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_002006_090--Hb_000614_230 Hb_002006_090--Hb_008695_210 Hb_002006_090--Hb_000001_140 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_000236_140 Hb_000236_140 Hb_007416_270--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007416_270--Hb_003687_100 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_000479_130 Hb_000479_130 Hb_007416_270--Hb_000479_130 Hb_007416_270--Hb_008695_210 Hb_000907_080 Hb_000907_080 Hb_000001_140--Hb_000907_080 Hb_000001_140--Hb_001329_300 Hb_001051_100 Hb_001051_100 Hb_000001_140--Hb_001051_100 Hb_000001_140--Hb_008695_210 Hb_163145_020 Hb_163145_020 Hb_000001_140--Hb_163145_020 Hb_008695_210--Hb_000614_230 Hb_008695_210--Hb_006915_050 Hb_008695_210--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_000614_230--Hb_001329_300 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.381 29.1466 9.53033 23.0006 35.1617 60.7343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.485 30.7273 119.412 22.5621 24.9875

CAGE analysis