Hb_006922_080

Information

Type -
Description -
Location Contig6922: 112389-116027
Sequence    

Annotation

kegg
ID gmx:100779238
description E3 ubiquitin-protein ligase SINAT3-like
nr
ID XP_003526716.1
description PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
swissprot
ID Q9STN8
description E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1
trembl
ID I1KAS8
description E3 ubiquitin-protein ligase OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54481: 112370-115970
cDNA
(Sanger)
(ID:Location)		 020_D04.ab1: 113773-115970 , 049_P13.ab1: 113965-115970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_080 0.0 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
2 Hb_000012_090 0.0635273267 - - 3'-5' exonuclease, putative [Ricinus communis]
3 Hb_003453_020 0.0736543716 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
4 Hb_000116_170 0.0757345745 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
5 Hb_000176_110 0.0779218454 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
6 Hb_009118_010 0.0821268959 - - methionine aminopeptidase, putative [Ricinus communis]
7 Hb_003656_130 0.0840132906 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
8 Hb_003352_050 0.0879321896 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
9 Hb_000236_320 0.0933452561 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
10 Hb_002014_080 0.0944476634 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
11 Hb_003384_030 0.0948804155 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
12 Hb_028900_020 0.0950764127 - - unnamed protein product [Coffea canephora]
13 Hb_010120_030 0.0952285895 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_028639_060 0.0952516765 - - transporter, putative [Ricinus communis]
15 Hb_000803_300 0.0958168616 - - nuclear movement protein nudc, putative [Ricinus communis]
16 Hb_000684_180 0.0961194555 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
17 Hb_025557_020 0.0969069072 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
18 Hb_023226_060 0.0979574071 - - unnamed protein product [Vitis vinifera]
19 Hb_000322_050 0.0984536859 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
20 Hb_005914_230 0.098520695 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006922_080 Hb_006922_080 Hb_000012_090 Hb_000012_090 Hb_006922_080--Hb_000012_090 Hb_003453_020 Hb_003453_020 Hb_006922_080--Hb_003453_020 Hb_000116_170 Hb_000116_170 Hb_006922_080--Hb_000116_170 Hb_000176_110 Hb_000176_110 Hb_006922_080--Hb_000176_110 Hb_009118_010 Hb_009118_010 Hb_006922_080--Hb_009118_010 Hb_003656_130 Hb_003656_130 Hb_006922_080--Hb_003656_130 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_004608_020 Hb_004608_020 Hb_000116_170--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000116_170--Hb_000631_150 Hb_025557_020 Hb_025557_020 Hb_000116_170--Hb_025557_020 Hb_000849_100 Hb_000849_100 Hb_000116_170--Hb_000849_100 Hb_000116_170--Hb_009118_010 Hb_003352_050 Hb_003352_050 Hb_000176_110--Hb_003352_050 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_009118_010--Hb_003602_040 Hb_009118_010--Hb_004608_020 Hb_009118_010--Hb_000012_090 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030 Hb_003656_130--Hb_000012_090 Hb_010120_030 Hb_010120_030 Hb_003656_130--Hb_010120_030 Hb_018790_030 Hb_018790_030 Hb_003656_130--Hb_018790_030 Hb_003656_130--Hb_000956_030 Hb_000803_300 Hb_000803_300 Hb_003656_130--Hb_000803_300 Hb_002149_020 Hb_002149_020 Hb_003656_130--Hb_002149_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.8258 16.0079 16.4428 18.1615 83.3568 80.7087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.3487 25.5241 32.3611 23.4592 8.57469

CAGE analysis