Hb_006922_100

Information

Type -
Description -
Location Contig6922: 137633-169200
Sequence    

Annotation

kegg
ID cic:CICLE_v10026951mg
description hypothetical protein
nr
ID XP_012086465.1
description PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JSK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23928 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54484: 137581-169199 , PASA_asmbl_54485: 138404-169199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_100 0.0 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
2 Hb_005663_060 0.0551644695 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
3 Hb_004055_030 0.0626016739 - - casein kinase, putative [Ricinus communis]
4 Hb_000020_190 0.0632536896 - - hypothetical protein RCOM_0452240 [Ricinus communis]
5 Hb_001862_190 0.0633946206 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
6 Hb_007441_120 0.0649668258 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
7 Hb_001199_020 0.0682524761 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
8 Hb_002016_110 0.068909683 - - transducin family protein [Populus trichocarpa]
9 Hb_004724_200 0.0696252761 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_000134_090 0.0708212203 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
11 Hb_000445_420 0.0710254001 - - protein transporter, putative [Ricinus communis]
12 Hb_002030_030 0.0731999755 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
13 Hb_001006_140 0.0734321223 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
14 Hb_005993_020 0.073866657 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
15 Hb_011671_430 0.0750075083 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
16 Hb_003929_160 0.0751793834 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
17 Hb_001680_010 0.0752959746 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
18 Hb_007218_080 0.0752993839 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
19 Hb_004310_130 0.0755199072 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
20 Hb_004812_010 0.0763552855 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]

Gene co-expression network

sample Hb_006922_100 Hb_006922_100 Hb_005663_060 Hb_005663_060 Hb_006922_100--Hb_005663_060 Hb_004055_030 Hb_004055_030 Hb_006922_100--Hb_004055_030 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_007441_120 Hb_007441_120 Hb_006922_100--Hb_007441_120 Hb_001199_020 Hb_001199_020 Hb_006922_100--Hb_001199_020 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_004055_030--Hb_007441_120 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_000445_420 Hb_000445_420 Hb_004055_030--Hb_000445_420 Hb_004055_030--Hb_001199_020 Hb_000020_190--Hb_001124_160 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_007441_120--Hb_000445_420 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_001199_020--Hb_007441_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0881 15.6028 11.3986 12.6971 23.4432 30.02
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.7658 20.0109 27.3884 14.2357 13.3074

CAGE analysis