Hb_006922_110

Information

Type -
Description -
Location Contig6922: 172644-173462
Sequence    

Annotation

kegg
ID rcu:RCOM_1241880
description hypothetical protein
nr
ID XP_012067141.1
description PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
swissprot
ID Q84WF5
description Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1
trembl
ID A0A067L477
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03264 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54488: 174268-178126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006922_110 0.0 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
2 Hb_003996_020 0.068433439 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_154648_010 0.0709675965 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
4 Hb_000000_250 0.0728050089 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
5 Hb_029584_130 0.0817205242 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
6 Hb_000200_050 0.0822981017 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003266_130 0.0829171274 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
8 Hb_000406_220 0.0836470935 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
9 Hb_000988_080 0.0840890069 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_005686_060 0.0850412527 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
11 Hb_000510_320 0.0865286822 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
12 Hb_004976_030 0.0874761555 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
13 Hb_000193_290 0.0878261552 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
14 Hb_000007_150 0.0892541918 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
15 Hb_007317_210 0.0894676233 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
16 Hb_000207_250 0.0906702631 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
17 Hb_005289_030 0.0909609779 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
18 Hb_002026_180 0.0916361235 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
19 Hb_000205_270 0.0916865938 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
20 Hb_034585_060 0.0923585665 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]

Gene co-expression network

sample Hb_006922_110 Hb_006922_110 Hb_003996_020 Hb_003996_020 Hb_006922_110--Hb_003996_020 Hb_154648_010 Hb_154648_010 Hb_006922_110--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_006922_110--Hb_000000_250 Hb_029584_130 Hb_029584_130 Hb_006922_110--Hb_029584_130 Hb_000200_050 Hb_000200_050 Hb_006922_110--Hb_000200_050 Hb_003266_130 Hb_003266_130 Hb_006922_110--Hb_003266_130 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040 Hb_003996_020--Hb_154648_010 Hb_154648_010--Hb_000000_250 Hb_004976_030 Hb_004976_030 Hb_154648_010--Hb_004976_030 Hb_003018_190 Hb_003018_190 Hb_154648_010--Hb_003018_190 Hb_006816_140 Hb_006816_140 Hb_154648_010--Hb_006816_140 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_000000_250--Hb_003996_020 Hb_001159_100 Hb_001159_100 Hb_029584_130--Hb_001159_100 Hb_000007_150 Hb_000007_150 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060 Hb_000427_050 Hb_000427_050 Hb_029584_130--Hb_000427_050 Hb_000200_050--Hb_006816_140 Hb_001158_140 Hb_001158_140 Hb_000200_050--Hb_001158_140 Hb_000200_050--Hb_004976_030 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_000200_050--Hb_003996_020 Hb_002835_410 Hb_002835_410 Hb_000200_050--Hb_002835_410 Hb_178968_110 Hb_178968_110 Hb_003266_130--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_003266_130--Hb_000614_230 Hb_003266_130--Hb_006816_140 Hb_005488_010 Hb_005488_010 Hb_003266_130--Hb_005488_010 Hb_003266_130--Hb_001158_140 Hb_010172_050 Hb_010172_050 Hb_003266_130--Hb_010172_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9201 10.2004 5.70526 11.5808 13.5735 29.0323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3843 27.8831 34.5978 12.1717 5.89991

CAGE analysis