Hb_006925_010

Information

Type -
Description -
Location Contig6925: 45827-54362
Sequence    

Annotation

kegg
ID bdi:100841899
description uncharacterized LOC100841899
nr
ID XP_004958683.2
description PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
swissprot
ID Q02200
description Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID A0A0E0R3B3
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0005576
description lignin-forming anionic peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54491: 45832-47404 , PASA_asmbl_54492: 52090-52261
cDNA
(Sanger)
(ID:Location)		 003_K13.ab1: 46296-47404 , 036_G07.ab1: 46356-47404 , 044_E16.ab1: 46296-47403 , 050_C16.ab1: 46804-47399

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006925_010 0.0 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
2 Hb_148986_010 0.0343423158 - - unnamed protein product [Vitis vinifera]
3 Hb_019392_010 0.0390393814 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
4 Hb_001266_110 0.039548658 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003334_020 0.040917743 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
6 Hb_080238_010 0.0417531835 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_000329_160 0.0435802844 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
8 Hb_000086_710 0.0456826752 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
9 Hb_004057_050 0.0487223681 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
10 Hb_000684_060 0.0564912433 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
11 Hb_058620_040 0.0589836638 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
12 Hb_058620_050 0.0627414053 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
13 Hb_000958_180 0.0647713847 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
14 Hb_009026_040 0.076901823 - - pathogenesis-related family protein [Populus trichocarpa]
15 Hb_001266_090 0.0787244338 - - -
16 Hb_003334_080 0.0803646824 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_185391_010 0.0815832227 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
18 Hb_000315_110 0.0815941898 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
19 Hb_036291_010 0.0836985381 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
20 Hb_000008_010 0.0849914935 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_006925_010 Hb_006925_010 Hb_148986_010 Hb_148986_010 Hb_006925_010--Hb_148986_010 Hb_019392_010 Hb_019392_010 Hb_006925_010--Hb_019392_010 Hb_001266_110 Hb_001266_110 Hb_006925_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_006925_010--Hb_003334_020 Hb_080238_010 Hb_080238_010 Hb_006925_010--Hb_080238_010 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_148986_010--Hb_019392_010 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_000086_710 Hb_000086_710 Hb_148986_010--Hb_000086_710 Hb_019392_010--Hb_000086_710 Hb_019392_010--Hb_001266_110 Hb_019392_010--Hb_003334_020 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180 Hb_001266_110--Hb_003334_020 Hb_001266_110--Hb_000086_710 Hb_004057_050 Hb_004057_050 Hb_001266_110--Hb_004057_050 Hb_003334_020--Hb_000086_710 Hb_003334_020--Hb_004057_050 Hb_003334_020--Hb_080238_010 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_080238_010--Hb_004057_050 Hb_080238_010--Hb_000684_060 Hb_080238_010--Hb_001266_110 Hb_000329_160--Hb_004057_050 Hb_000329_160--Hb_019392_010 Hb_000329_160--Hb_148986_010 Hb_000329_160--Hb_080238_010 Hb_000329_160--Hb_000086_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.25535 0.241064 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 21.4848 0.0360866

CAGE analysis