Hb_006925_050

Information

Type -
Description -
Location Contig6925: 104195-107261
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12310g
description POPTRDRAFT_830825; rhomboid family protein
nr
ID XP_012086985.1
description PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
swissprot
ID C8VCL5
description Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1
trembl
ID A0A067K115
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20650 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive rhomboid protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54496: 103943-107256 , PASA_asmbl_54498: 105548-107256
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006925_050 0.0 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
2 Hb_029253_010 0.0930939824 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
3 Hb_005511_130 0.0992356958 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
4 Hb_005357_110 0.100810004 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
5 Hb_004730_020 0.1020723311 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
6 Hb_006829_070 0.1050890616 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
7 Hb_001847_050 0.1093500213 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
8 Hb_000915_130 0.1164792029 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
9 Hb_119583_020 0.1173164589 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
10 Hb_002217_320 0.1203402039 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
11 Hb_001579_300 0.1204592915 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
12 Hb_003680_030 0.1278158765 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
13 Hb_005496_020 0.1284430592 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
14 Hb_003740_020 0.1287704972 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_000424_030 0.1290251758 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012807_150 0.1298407071 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
17 Hb_001195_130 0.130337408 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000032_410 0.1317923882 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
19 Hb_000388_080 0.1332862536 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
20 Hb_006120_060 0.1344112933 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_006925_050 Hb_006925_050 Hb_029253_010 Hb_029253_010 Hb_006925_050--Hb_029253_010 Hb_005511_130 Hb_005511_130 Hb_006925_050--Hb_005511_130 Hb_005357_110 Hb_005357_110 Hb_006925_050--Hb_005357_110 Hb_004730_020 Hb_004730_020 Hb_006925_050--Hb_004730_020 Hb_006829_070 Hb_006829_070 Hb_006925_050--Hb_006829_070 Hb_001847_050 Hb_001847_050 Hb_006925_050--Hb_001847_050 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005511_130--Hb_005357_110 Hb_005357_110--Hb_000032_410 Hb_005357_110--Hb_003740_020 Hb_005357_110--Hb_000915_130 Hb_005357_110--Hb_004730_020 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_004730_020--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_004730_020--Hb_003740_020 Hb_012762_060 Hb_012762_060 Hb_006829_070--Hb_012762_060 Hb_002026_020 Hb_002026_020 Hb_006829_070--Hb_002026_020 Hb_003680_030 Hb_003680_030 Hb_006829_070--Hb_003680_030 Hb_000424_030 Hb_000424_030 Hb_006829_070--Hb_000424_030 Hb_002217_320 Hb_002217_320 Hb_006829_070--Hb_002217_320 Hb_001847_050--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_001847_050--Hb_012807_150 Hb_001195_130 Hb_001195_130 Hb_001847_050--Hb_001195_130 Hb_001847_050--Hb_004730_020 Hb_000342_170 Hb_000342_170 Hb_001847_050--Hb_000342_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55386 16.1908 44.5535 60.3939 5.67768 6.53644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.80739 8.24827 4.61668 6.11358 27.4442

CAGE analysis