Hb_006925_090

Information

Type -
Description -
Location Contig6925: 173849-184777
Sequence    

Annotation

kegg
ID vvi:100266763
description protein HAPLESS 2
nr
ID XP_011029203.1
description PREDICTED: protein HAPLESS 2 [Populus euphratica]
swissprot
ID F4JP36
description Protein HAPLESS 2 OS=Arabidopsis thaliana GN=HAP2 PE=2 SV=1
trembl
ID F6HUF4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g04090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54500: 180185-180769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006925_090 0.0 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
2 Hb_011505_010 0.1806414022 - - -
3 Hb_000260_150 0.2153992764 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
4 Hb_026527_040 0.2950866228 - - conserved hypothetical protein [Ricinus communis]
5 Hb_104498_030 0.3121486623 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
6 Hb_171062_010 0.314427423 - - hypothetical protein VITISV_036059 [Vitis vinifera]
7 Hb_002284_110 0.3244403082 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
8 Hb_000599_220 0.3271087353 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
9 Hb_021346_040 0.3304350461 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
10 Hb_001421_050 0.3354366017 - - -
11 Hb_000853_040 0.3415251144 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003938_030 0.3460133674 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
13 Hb_000392_460 0.3477860235 - - Pectate lyase precursor, putative [Ricinus communis]
14 Hb_007145_010 0.3569996512 - - ammonium transporter 3.1-like protein [Camellia sinensis]
15 Hb_011972_010 0.3572594653 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002173_010 0.3580193177 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_083822_010 0.3666067729 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_105226_010 0.3679099899 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
19 Hb_005679_080 0.3699969483 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
20 Hb_167452_010 0.3713699383 - - hypothetical protein JCGZ_03682 [Jatropha curcas]

Gene co-expression network

sample Hb_006925_090 Hb_006925_090 Hb_011505_010 Hb_011505_010 Hb_006925_090--Hb_011505_010 Hb_000260_150 Hb_000260_150 Hb_006925_090--Hb_000260_150 Hb_026527_040 Hb_026527_040 Hb_006925_090--Hb_026527_040 Hb_104498_030 Hb_104498_030 Hb_006925_090--Hb_104498_030 Hb_171062_010 Hb_171062_010 Hb_006925_090--Hb_171062_010 Hb_002284_110 Hb_002284_110 Hb_006925_090--Hb_002284_110 Hb_011505_010--Hb_000260_150 Hb_001195_430 Hb_001195_430 Hb_011505_010--Hb_001195_430 Hb_000392_460 Hb_000392_460 Hb_011505_010--Hb_000392_460 Hb_011505_010--Hb_104498_030 Hb_011174_030 Hb_011174_030 Hb_011505_010--Hb_011174_030 Hb_001638_010 Hb_001638_010 Hb_000260_150--Hb_001638_010 Hb_002257_020 Hb_002257_020 Hb_000260_150--Hb_002257_020 Hb_167452_010 Hb_167452_010 Hb_000260_150--Hb_167452_010 Hb_114435_010 Hb_114435_010 Hb_000260_150--Hb_114435_010 Hb_001421_050 Hb_001421_050 Hb_026527_040--Hb_001421_050 Hb_000111_400 Hb_000111_400 Hb_026527_040--Hb_000111_400 Hb_034904_010 Hb_034904_010 Hb_026527_040--Hb_034904_010 Hb_011972_010 Hb_011972_010 Hb_026527_040--Hb_011972_010 Hb_026527_040--Hb_011505_010 Hb_000175_550 Hb_000175_550 Hb_104498_030--Hb_000175_550 Hb_176121_010 Hb_176121_010 Hb_104498_030--Hb_176121_010 Hb_000701_070 Hb_000701_070 Hb_104498_030--Hb_000701_070 Hb_003658_030 Hb_003658_030 Hb_104498_030--Hb_003658_030 Hb_003902_060 Hb_003902_060 Hb_171062_010--Hb_003902_060 Hb_025669_030 Hb_025669_030 Hb_171062_010--Hb_025669_030 Hb_001623_310 Hb_001623_310 Hb_171062_010--Hb_001623_310 Hb_002447_160 Hb_002447_160 Hb_171062_010--Hb_002447_160 Hb_000045_280 Hb_000045_280 Hb_171062_010--Hb_000045_280 Hb_003768_060 Hb_003768_060 Hb_171062_010--Hb_003768_060 Hb_000599_220 Hb_000599_220 Hb_002284_110--Hb_000599_220 Hb_000733_100 Hb_000733_100 Hb_002284_110--Hb_000733_100 Hb_002173_010 Hb_002173_010 Hb_002284_110--Hb_002173_010 Hb_022534_010 Hb_022534_010 Hb_002284_110--Hb_022534_010 Hb_103790_010 Hb_103790_010 Hb_002284_110--Hb_103790_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0397931 0.0556096 0.00871897 0 0.0316263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0646325 0 0 0

CAGE analysis